Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6310g00001 AACACTAGGGAAACTGCGTTTGCAATCAGGAAGTTGCCCTTGATCAAGGCCAAAAGGTACCTGGAAGACGTTCTTGCACACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTAGGAAGGACTGCCCAGGCCAAGAATAGGCACTCTAATGGACAAGGAAGGTGGCCTGCCAAGTCCGCAAAGTTCATCCTTGACTTACTCAAGAATGCTGAGAGCAACGCAGAAGTGAAAGCTTACATGTCATCTCCATGCCACATTGAGTTGATTTTATCTGAAAAAGAAGAGGCTGTCAGGAAGGAGCCTGAGTCCCAGTTGGCAACCAGCAAGAAGGCTTAA 342 0.4795 NTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKAYMSSPCHIELILSEKEEAVRKEPESQLATSKKA 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6310g00001 113 Pfam Ribosomal protein L22p/L17e 1 80 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trme6310g00001 113 PANTHER 60S RIBOSOMAL PROTEIN L17 79 112 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trme6310g00001 113 Gene3D Ribosomal protein L22/L17 1 81 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trme6310g00001 113 NCBIfam 50S ribosomal protein L22 1 100 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trme6310g00001 113 SUPERFAMILY Ribosomal protein L22 1 95 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6310g00001 Trme-Chr6310 248 971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6310g00001 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 68.056 2.76e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6310g00001 K02880 - gmx:100499784 198.749