Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62g00001 TTTTGGTTGTCCGCTTTCGATTGTCCTCATTGTGGCAACAAGAATAATGAAGTAATGTATGTTGACGAAATTCCAATTCGTTGTTGCTGTTACACCTTGAAGATCTCATCAGGCAATCCAGAGATGCTCAACAGACAAGTGGTAAAATCAGAACATGCTACCATCAAGATACCGGAGTTGGATTTTGAGATTCAATCAGAGGCTCGGCGTGGCAGTCTGTCAACGGTAGAAGGGATACTGATGCGAGCTGCTGATGAACTTCAAGAACGATGCAAGAATGTTGCTCCGGAGACAGCTGAAGCAATAGATCAATTTTTGGTGAAGTTGCGAGCCTGTTGCGCAGGAGAATCATCATTTACATTTGTTCTTGACGATCCTGCTGGAAATAGCTTTGTTGAAAACCCGTTTGCTCCGTCATCTGATCCGTCAATGACAATCAAGTTTTATGATCGAACTCCTGAGAAACAAGCATCATTGGGATATCAAGTTACACAAATTGGAGGAACTCCAGATGAAGCACTATCAGAAGTTTCCAACCAAGTGAAGGGAGAACCACACGGGTCTGTAGGGGCAGCAGCAGGTCACCGAGCCATTGCACAGAGTAATAGTGCAGAGATTGCAGAAGCCTTATTTCGATATAGTACACCAGAAGAGGTGATGACTTTCCCAACAACTTGTTATGCTGGTTGTGCCGGTGGATGCGAAACTCGAATGTTTGAAATTGATATTCCATACTTCAAAAAAGGAATCATTATGGCATTCACTTGCGATGTTTGTGGTTACCGAAACTCTGAGTTGAAAGCGGGTGGGGGATTTGCAGAAAAAGGAAAAAAGATGACTCTTCATGTGAAAAATGTTAACGACCTAAACCGTGATGTAATAAAGTCTGATACGGCTAGCGTGCAAGTGCCTGAACTTGACTTGGAGTTGGCAAGTGGCACTTTAGGAGGAGTTGTTACAACTGTTGAAGGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGACAGTCTTGATGAACATAGTAGAAGCAAGTGGCTTGACTTTGGGGCCAGGCTGAACAAGCTTCTTAGCTTGGAAAAACCTTGGACTTTAATTCTTGATGATGCATTGGCAAATTCTTTCATAGCACCTGCAACTGATGATCTAAAAGACGACAAACAATTAATGTTTGAGGAATATGAGAGGACATGGGAGCAAGATGAAGAATTAGGTCTCCATGATATGGACACATCTTCTGCCGATGCTGCTTATGAATCAGCAAATACTAGTAGCAGTGAGTAA 1281 0.4286 FWLSAFDCPHCGNKNNEVMYVDEIPIRCCCYTLKISSGNPEMLNRQVVKSEHATIKIPELDFEIQSEARRGSLSTVEGILMRAADELQERCKNVAPETAEAIDQFLVKLRACCAGESSFTFVLDDPAGNSFVENPFAPSSDPSMTIKFYDRTPEKQASLGYQVTQIGGTPDEALSEVSNQVKGEPHGSVGAAAGHRAIAQSNSAEIAEALFRYSTPEEVMTFPTTCYAGCAGGCETRMFEIDIPYFKKGIIMAFTCDVCGYRNSELKAGGGFAEKGKKMTLHVKNVNDLNRDVIKSDTASVQVPELDLELASGTLGGVVTTVEGLERVHGFTFGDSLDEHSRSKWLDFGARLNKLLSLEKPWTLILDDALANSFIAPATDDLKDDKQLMFEEYERTWEQDEELGLHDMDTSSADAAYESANTSSSE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62g00001 426 PANTHER ZINC FINGER PROTEIN ZPR1 3 419 IPR040141 -
Trme62g00001 426 Gene3D ZPR1, zinc finger domain 214 270 IPR042452 -
Trme62g00001 426 FunFam Zinc finger protein ZPR1 215 270 - -
Trme62g00001 426 Pfam ZPR1 zinc-finger domain 3 133 IPR004457 GO:0008270
Trme62g00001 426 Pfam ZPR1 zinc-finger domain 229 375 IPR004457 GO:0008270
Trme62g00001 426 MobiDBLite consensus disorder prediction 401 426 - -
Trme62g00001 426 NCBIfam ZPR1 zinc finger domain 5 157 IPR004457 GO:0008270
Trme62g00001 426 NCBIfam ZPR1 zinc finger domain 229 409 IPR004457 GO:0008270
Trme62g00001 426 SMART zpr1 3 134 IPR004457 GO:0008270
Trme62g00001 426 SMART zpr1 224 377 IPR004457 GO:0008270
Trme62g00001 426 FunFam Zinc finger protein ZPR1 271 405 - -
Trme62g00001 426 Gene3D ZPR1, A/B domain 272 405 IPR042451 -
Trme62g00001 426 Gene3D ZPR1, A/B domain 24 161 IPR042451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62g00001 Trme-Chr62 108 4735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62g00001 3 423 C2H2 Transcription Factor Family AT5G22480 67.206 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62g00001 K06874 - gmx:100798741 622.083