Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62992g00001 ATGGGAAACAACTGTGTCGGAACGAGAAGAACCTCACGTTCAAAGGATGAACCATCACACTCTAAACTTCCAACTCTATCTTGCTGGTCACGTGGAACCAAGAAAGATCATTTACACAAAACCAATCCAACAAATGCTATAGAAATTGTTCAAAACCGGCCTCCGCAGGTAGTGAAAATTGAAACGGACGATGTAAAACCACCACCACAACAAAAATCACAAACGAGTCAAGTTTCTGTTGCTGCTACACCTTCAAAACAAAAGAGACCTCACAATGTGAAGAGAGTAGTAAGTGCAGGGCTAAAAACAGATTCAGTTTTACAGCGAAAAACAGTTAGTCTTAGAGAGTTTTATAATTTGGGACCAAAGCTTGGACAAGGGCAATTTGGAACTACGTTTCTTTGCGTGGAGAAAGCTACTGGAAAAGAGTATGCATGTAAATCCATCATGAAGAGGAAATTGTTGACAGAAGAGGATGTTGAAGATGTGAGGAGGGAGATTCAGATTATGCATCACTTGGCCGGGTGTCCGAATGTGATTTCAATTAAGGAAGCTTCYGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGTTGTGTTCGGGTGGTGAACTTTTTGATAGGATTGTGGAAAGAGGGCATTATACAGAAAGAAAAGCAGCTAAACTTGCAAGAACTATTGTTGGTGTAATTCAGTCATGTCATGCTCTTGGTGTAATGCATCGTGATCTTAAGCCGGAGAATTTTCTTTTTGTTAATCAACAGGAAGATTCTCCTCTTAAGGCTATAGATTTTGGACTATCTGCTTTTTTTAAACCAG 817 0.4002 MGNNCVGTRRTSRSKDEPSHSKLPTLSCWSRGTKKDHLHKTNPTNAIEIVQNRPPQVVKIETDDVKPPPQQKSQTSQVSVAATPSKQKRPHNVKRVVSAGLKTDSVLQRKTVSLREFYNLGPKLGQGQFGTTFLCVEKATGKEYACKSIMKRKLLTEEDVEDVRREIQIMHHLAGCPNVISIKEASEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHALGVMHRDLKPENFLFVNQQEDSPLKAIDFGLSAFFKP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62992g00001 272 Pfam Protein kinase domain 118 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62992g00001 272 SUPERFAMILY Protein kinase-like (PK-like) 116 270 IPR011009 -
Trme62992g00001 272 Gene3D Phosphorylase Kinase; domain 1 121 203 - -
Trme62992g00001 272 SMART serkin_6 118 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62992g00001 272 PANTHER SERINE/THREONINE-PROTEIN KINASE 103 271 - -
Trme62992g00001 272 FunFam Calcium-dependent protein kinase 1 120 203 - -
Trme62992g00001 272 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Trme62992g00001 272 MobiDBLite consensus disorder prediction 61 92 - -
Trme62992g00001 272 Gene3D Transferase(Phosphotransferase) domain 1 204 272 - -
Trme62992g00001 272 ProSiteProfiles Protein kinase domain profile. 118 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62992g00001 272 MobiDBLite consensus disorder prediction 1 44 - -
Trme62992g00001 272 MobiDBLite consensus disorder prediction 67 86 - -
Trme62992g00001 272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62992g00001 Trme-Chr62992 11 827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62992g00001 55 272 EF-hand Containing Proteins AT3G10660 71.101 1.56e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme62992g00001 Pkinase 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62992g00001 K13412 - gmx:100783079 407.142