Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62971g00001 ATGTGCAGCTTCGGCGGCAAAATCCTCCCCCGTCCCTCCGACAATCAGCTCCGTTACGTCGGCGGAGACACCCGAATCGTCGCCGTTAACCGCTCCATTTCATTCTCCGCCCTTGTCCACAAACTCTCTAAACTCTCCGGCATGACCAACATAACAGCWAAGTACCAACTTCCAAATGAAGACTTAGACGCGTTGATTACAGTAACAACAGACGAAGATGTAGATAACATGATAGACGAATACGACCGCGTTTCACAGAATGAAAACCCACGCGCGGCTCGGCTAAGACTCTTTCTTTTCCCAGAAGGTGAAGATTCTCGAACCAATAGTATAAGCTCGCTCTTAAACGGCTCAACTAAAAGAGAAAATTGGTTTATGGATGCTTTAAACGGTGGCGTTTCAGGACTTGAACGAGGTCGTTCAGAAGCTTCTTCTATGGTTTCTGAAGTACCCGATTATTTATTCGGGTTGGATAATAANNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAAGAACGAAACGTTCTTCAACAATTAGATAACGTTTCGAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCTCCGTTTTGTTCTACTTCATCTGCGTCTATTCCGAATCTTCCACCGGTTAAAACCAAACCCGAAAACCCGGTTTATGAACCGGATTTTAAAACAAGTCAAATTGAAACTGAAACGGTTTTGCAACCACAA 726 0.4229 MCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMTNITAKYQLPNEDLDALITVTTDEDVDNMIDEYDRVSQNENPRAARLRLFLFPEGEDSRTNSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNXXXXXXXXXXXXXXKERNVLQQLDNVSNSDPGSPAPVVSSPFCSTSSASIPNLPPVKTKPENPVYEPDFKTSQIETETVLQPQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62971g00001 242 Coils Coil 174 182 - -
Trme62971g00001 242 SMART PB1_new 12 100 IPR000270 GO:0005515
Trme62971g00001 242 MobiDBLite consensus disorder prediction 228 242 - -
Trme62971g00001 242 PANTHER OS05G0427100 PROTEIN-RELATED 1 209 - -
Trme62971g00001 242 MobiDBLite consensus disorder prediction 181 242 - -
Trme62971g00001 242 Pfam PB1 domain 14 101 IPR000270 GO:0005515
Trme62971g00001 242 Coils Coil 157 159 - -
Trme62971g00001 242 CDD PB1_UP2 1 100 - -
Trme62971g00001 242 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 17 102 - -
Trme62971g00001 242 SUPERFAMILY CAD & PB1 domains 13 109 - -
Trme62971g00001 242 MobiDBLite consensus disorder prediction 181 212 - -
Trme62971g00001 242 Gene3D - 18 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62971g00001 Trme-Chr62971 1 817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62971g00001 1 144 MAP Kinase Kinase Kinase AT3G46920 39.310 4.65e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62971g00001 - - vvo:131602752 382.104