Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme628901g00001 GAGGAAGAACATGGAGATGCATCGTGTGGGGCATGTGGAGAAAGCTATGCAACTGATGAGTTTTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCATGGAAAATGTGTGAAGATTACTCCGGCAAGGGCTGAGCATATCAAACAATACAAATGTCCAGCTTGCAGCAAGAGAGCTCGCACTTGA 186 0.457 EEEHGDASCGACGESYATDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSKRART 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme628901g00001 61 PANTHER CPG BINDING PROTEIN 1 60 IPR045104 GO:0006355|GO:0042393
Trme628901g00001 61 ProSiteProfiles Zinc finger PHD-type profile. 6 58 IPR019787 -
Trme628901g00001 61 SUPERFAMILY FYVE/PHD zinc finger 3 58 IPR011011 -
Trme628901g00001 61 ProSitePatterns Zinc finger PHD-type signature. 9 55 IPR019786 -
Trme628901g00001 61 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Trme628901g00001 61 SMART PHD_3 8 56 IPR001965 -
Trme628901g00001 61 Pfam PHD-finger 9 57 IPR019787 -
Trme628901g00001 61 FunFam PHD finger alfin-like protein 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme628901g00001 Trme-Chr628901 3 188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme628901g00001 4 60 Alfin-like Transcription Factor Family AT3G42790 82.759 5.50e-31 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme628901g00001 PHD 1.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme628901g00001 K26274 - gmx:100170697 129.798