Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62884g00001 ATGTTAAAAGTACTTCCAAATTGTAGCCAYCATTTTCACTTAGATTGCATTAACATTTGGCTTCAAACAAATGCTAATTGCCCTCTTTGTAGAACAAGCATTGCCGGCAACACGCAGTTTCCGACGAACCATATCATACCAGCACCAAGCTCTTCACCACAAGATTCTCAGTTACTCTCAAACATAGGTAGTGATGAAGATTATGTGGTCATTGAATTGTGGGGAGAAGGAGGGAATCAAGGAACAATGTCACATATGCAGCAAGAAAGAATCGAG 276 0.4022 MLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSIAGNTQFPTNHIIPAPSSSPQDSQLLSNIGSDEDYVVIELWGEGGNQGTMSHMQQERIE 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62884g00001 92 PANTHER RING-H2 FINGER PROTEIN ATL16 1 89 IPR044600 GO:0016567|GO:0016740
Trme62884g00001 92 Pfam RING-H2 zinc finger domain 4 31 IPR024766 GO:0008270
Trme62884g00001 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 35 IPR013083 -
Trme62884g00001 92 ProSiteProfiles Zinc finger RING-type profile. 8 31 IPR001841 -
Trme62884g00001 92 SUPERFAMILY RING/U-box 3 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62884g00001 Trme-Chr62884 1 276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62884g00001 2 79 C3H Transcription Factor Family AT1G04360 50.000 9.18e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62884g00001 K19041 - psat:127126067 162.54