Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62854g00001 ATGTCACAACCAACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTACTCACAACTGGATGGAGTACTTTTGTGACTTCTAAAAGATTAGTTGCTGGAGACACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGCATGTCATCATCTGTGATTTCTAGCCAAAGCATGCACCTTGGAGTTCTTGCAACTGCCTCCCACGCTGTTGCATCTCAGACTCTTTTTGTTGTATATTATAAGCCGAG 338 0.4467 MSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMSSSVISSQSMHLGVLATASHAVASQTLFVVYYKP 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62854g00001 112 SMART B3_2 1 72 IPR003340 GO:0003677
Trme62854g00001 112 Gene3D - 1 71 IPR015300 -
Trme62854g00001 112 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Trme62854g00001 112 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 112 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme62854g00001 112 Pfam B3 DNA binding domain 5 70 IPR003340 GO:0003677
Trme62854g00001 112 CDD B3_DNA 4 70 IPR003340 GO:0003677
Trme62854g00001 112 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62854g00001 Trme-Chr62854 54 626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62854g00001 1 112 B3 DNA Binding Superfamily AT2G46530 85.714 5.61e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme62854g00001 B3 1.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62854g00001 K14486 - gmx:100779003 213.772