Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6284g00001 ATGGATCAATGTCAAGGTGACATTCCACAAAAGTCTCCAAACAAGGACAGTGAATCTCTTAACAAAGAAACAGTTTTCTTACATGGTGACTTAGATCTATTAATCATAGAAGCTAAATCTCTTCCAAATCTTGATTTATCAACTGAAGCAATTAGAAGATGTATCACTATGGGAAACAGTTGCACACCACCTTTTGTAAAAGGACTCAAAACACACTCAGGAAAAGATAAGATCATAACAAGTGATCCTTATGTATCGGTTTGTCTAGCTGGTGCAACCATAGCACAAACTCGAGTAATTCCAAATTGCGAAAACCCTTTATGGGATGAACATTTTGTTGTTCCTGTTGCTCATCCTGTTCAAAAAGTTGAGTTTTCAGTAAAAGATAATGACATTCTTGGCGCGGAACTCATTGGTACCGTGGACATACCTGTTCAAAAGATACTATCTGGTGAGACTCTTAATGATTGGTTTCCGATTATAGGTCAATATGGAAATTGTTTAAAGCCTTATCCNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGATTAAAGAAGATTATGGAAGTGTTAATTTAGGTGTTCCTGGTACATATTTTCCGCTTAGAAAAGGAGGGAATGTTACTCTTTATCAAGATGCACATGTACCGGACGGTATGTTACCTGATATTGAACTTGAAGATGGAAAAATGTATCAACATAGTAAATGTTGGGAGGATATTTGTCACGCGATTTTGGAAGCTCATCATTTGATATATATTATCGGATGGTCGGTTTTTCACCCTGTGAAGCTTGTTAGAGAACCGACAAAACCATTGCCTTCTGGTGGAGAGCTTACACTTGGAGAACTTTTGAAATACAAGTCACAAGAAGGACTAAGAGTTGTTATGCTTATTTGGGATGATAGAACTTCACATGACAAGTTTCTTTTGAAAACA 945 0.3524 MDQCQGDIPQKSPNKDSESLNKETVFLHGDLDLLIIEAKSLPNLDLSTEAIRRCITMGNSCTPPFVKGLKTHSGKDKIITSDPYVSVCLAGATIAQTRVIPNCENPLWDEHFVVPVAHPVQKVEFSVKDNDILGAELIGTVDIPVQKILSGETLNDWFPIIGQYGNCLKPYPXXXXXXXXXXXXXIKEDYGSVNLGVPGTYFPLRKGGNVTLYQDAHVPDGMLPDIELEDGKMYQHSKCWEDICHAILEAHHLIYIIGWSVFHPVKLVREPTKPLPSGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6284g00001 315 CDD C2_plant_PLD 24 170 - -
Trme6284g00001 315 ProSiteProfiles C2 domain profile. 12 158 IPR000008 -
Trme6284g00001 315 SMART C2_3c 30 157 IPR000008 -
Trme6284g00001 315 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 163 IPR035892 -
Trme6284g00001 315 Pfam C2 domain 29 160 IPR000008 -
Trme6284g00001 315 PANTHER PHOSPHOLIPASE D 22 311 IPR015679 -
Trme6284g00001 315 Gene3D C2 domain 24 167 IPR035892 -
Trme6284g00001 315 SUPERFAMILY Phospholipase D/nuclease 200 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6284g00001 Trme-Chr6284 30 974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6284g00001 17 315 Phospholipase D Gene Family (Wang group) AT4G35790 48.428 7.46e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6284g00001 K01115 - gmx:100810824 509.605