Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme627732g00001 | ATGCCTCACAAGTTCTACCATGGCCGTACCGGTCGTGTCTGGAATGTTACCAAACGTGTCATTAACGTTGAAGTCAATAAGCAG | 84 | 0.4643 | MPHKFYHGRTGRVWNVTKRVINVEVNKQ | 28 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme627732g00001 | 28 | SUPERFAMILY | Translation proteins SH3-like domain | 1 | 27 | IPR008991 | - | |
| Trme627732g00001 | 28 | Pfam | Ribosomal protein L21e | 1 | 28 | IPR001147 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme627732g00001 | 28 | Gene3D | Ribosomal protein L21 | 1 | 28 | IPR036948 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme627732g00001 | 28 | PANTHER | 60S RIBOSOMAL PROTEIN L21 | 1 | 28 | IPR001147 | GO:0003735|GO:0005840|GO:0006412 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme627732g00001 | 1 | 28 | Cytoplasmic Ribosomal Protein Gene Family | AT1G09690 | 85.714 | 1.28e-13 | 57.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme627732g00001 | K02889 | - | pvy:116127640 | 60.8474 |