Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6272g00001 GCTTTTCGTGAAGTAAGGCAATTTGAAGTTTTTGGAGAAATAGGAGTGCTATGTTACAGGCCACAACTTTATACAGCTCGGACCAAGCTATTAAGCCAGATCTTGCGTTTGAGTCGAACATCATTTCTAAACCTTGTTCATAACAATGTTGAAGACGGAACAATTATCATGAACAATTTTCTCAAGCATGTGCACACTTTAAGTTTAACGTACCCGTCCATGGTAGGATTTATGGCTGAAGTAGAGACATTGTTGTCAACAGGCAAAATGGATTTGCCTATAAGTTTAGTATTTGCAGCTGAAAAAGATGATGATATGCTGTTGCATCAATTGCTGAAAAAAGGCTCAGATCCAAATGAAATAGATCACAAAAATGGAAAGACACCACTGCATGTTGCAGCTTTTAAAGGCAGTGATCATTGTGTGGTTTTGCTTCTAGAATTTGGAGCTGATCCCAACATACAAGACTTTGAAGGAAATATATCACTATGTGAAGCAATGAAAGGAGGGCATGAATTAGTGAAAAAACTACTTATAGAAAATGGTGCAGATATATCTTCCGCTAACGTGACTCCTTTAGCAATCTTCGCTATCGAGAAAAATGACATTCAATTACTAAAAGATATTATGAAACTTGGTGGTGATATTGTGACAAACTTTACAAAAGAAGGAACCACTGCACTTCATGCTGCTGTATGTGAAGGAAATGTTCAAATAGTTAAGTTTCTTGTAGAACAAGGAGCAGATATCGATAAGCATGATAAAGCTGGTTGGACTCCAAGAAATTTAGCAGATCATCAATGCCATGAAGAGATACAAAATATGTTTAAAGAAATTCCACATGTTATTCCTCAAATGCCAAATAATAATGGAGGGTCAAATATTCCAAAGTCTTACAGTGAACCTTCTATGCTAGCTATGTCTCGAGGTGGTAGCTTCCGACCTAATCAAGAGTTGACATGTTTGAATGGTCATCAAAAAAGAAGGGTTGGCTCTTTTAGGAATTCCTTTTTTGGAATGGTTACATCTGCTAAACGAGGTAAATATATATATGCCTTTAACTGCAATTTAAAATAA 1077 0.3621 AFREVRQFEVFGEIGVLCYRPQLYTARTKLLSQILRLSRTSFLNLVHNNVEDGTIIMNNFLKHVHTLSLTYPSMVGFMAEVETLLSTGKMDLPISLVFAAEKDDDMLLHQLLKKGSDPNEIDHKNGKTPLHVAAFKGSDHCVVLLLEFGADPNIQDFEGNISLCEAMKGGHELVKKLLIENGADISSANVTPLAIFAIEKNDIQLLKDIMKLGGDIVTNFTKEGTTALHAAVCEGNVQIVKFLVEQGADIDKHDKAGWTPRNLADHQCHEEIQNMFKEIPHVIPQMPNNNGGSNIPKSYSEPSMLAMSRGGSFRPNQELTCLNGHQKRRVGSFRNSFFGMVTSAKRGKYIYAFNCNLK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6272g00001 358 ProSiteProfiles Ankyrin repeat region circular profile. 223 255 - -
Trme6272g00001 358 SMART ANK_2a 188 218 IPR002110 GO:0005515
Trme6272g00001 358 SMART ANK_2a 91 120 IPR002110 GO:0005515
Trme6272g00001 358 SMART ANK_2a 158 187 IPR002110 GO:0005515
Trme6272g00001 358 SMART ANK_2a 223 252 IPR002110 GO:0005515
Trme6272g00001 358 SMART ANK_2a 125 154 IPR002110 GO:0005515
Trme6272g00001 358 PANTHER POTASSIUM CHANNEL AKT1 7 287 IPR045319 GO:0005249|GO:0006813
Trme6272g00001 358 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Trme6272g00001 358 SUPERFAMILY Ankyrin repeat 73 278 IPR036770 -
Trme6272g00001 358 PRINTS Ankyrin repeat signature 126 141 IPR002110 GO:0005515
Trme6272g00001 358 PRINTS Ankyrin repeat signature 239 253 IPR002110 GO:0005515
Trme6272g00001 358 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Trme6272g00001 358 CDD CAP_ED 9 57 IPR000595 -
Trme6272g00001 358 ProSiteProfiles Ankyrin repeat region circular profile. 125 156 - -
Trme6272g00001 358 ProSiteProfiles cAMP/cGMP binding motif profile. 1 63 IPR000595 -
Trme6272g00001 358 ProSiteProfiles Ankyrin repeat profile. 125 157 IPR002110 GO:0005515
Trme6272g00001 358 SUPERFAMILY cAMP-binding domain-like 6 62 IPR018490 -
Trme6272g00001 358 Pfam Ankyrin repeats (3 copies) 96 156 IPR002110 GO:0005515
Trme6272g00001 358 Pfam Ankyrin repeats (3 copies) 166 253 IPR002110 GO:0005515
Trme6272g00001 358 Gene3D - 92 278 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6272g00001 Trme-Chr6272 182 1891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6272g00001 4 344 Ion Channels AT2G25600 52.557 5.91e-109 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6272g00001 K21867 - gmx:100808832 394.815