Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62711g00001 ATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTACGAAGCGGAGGCTATCCGAGGATGGCTTGACAGTGGTCATGACACTTCACCGATGACAAATAGTACGCTTTCACATCAGAATCTTGTCCCCAACCGCGGTCTTCGCTCCGCGATCCAGGATTGGCTTCAAAGCCACTGA 177 0.5085 MRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQNLVPNRGLRSAIQDWLQSH 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62711g00001 58 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 58 IPR013083 -
Trme62711g00001 58 ProSiteProfiles U-box domain profile. 1 58 IPR003613 GO:0004842|GO:0016567
Trme62711g00001 58 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Trme62711g00001 58 SUPERFAMILY RING/U-box 1 58 - -
Trme62711g00001 58 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 1 57 - -
Trme62711g00001 58 CDD RING-Ubox_WDSUB1-like 1 44 - -
Trme62711g00001 58 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62711g00001 Trme-Chr62711 164 340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62711g00001 1 58 U-box Gene Family AT2G45910 77.586 2.39e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62711g00001 - - gmx:100810508 113.62