Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6270g00001 ATGGTGAAAGAAGGTGGCCCAAAGCCTTTGATTGCTGTTAACTATAATGGTGAAGAGACGGTATTTCGTCCTGAAGACATTTCAGCAATGATCATACAGAAGTTGAAAAACATGGCTGAAGAATTTCTCGGAATGACTGTCATAGATNAGGCAGGGCTGGCTTGTGGATTGAATGTGCTGAGATTGATCAATGACACAACTGCCTCTGCACTTACATGTGCTTATGATAAGATTGTTTCTTCCCAGCAAAATGTATTGATTTTTGACTTCGGTGGTGGATCCCTAGATGTTGCAGTTACGGATATTGACGGGGGCAGGGGAGGGGGAGTAATTGTTGCTCCAAAAGCAACTATGGGTGATAAAAACCTTGGTGGATTGGATTTGGATAAAAGAATGGTTGACTACTTTGTTAAAAAAATTAGGAATGAAGTTGGTTTGGATATAACTGAAAATTGGAAAGCTCTTGGGAAGTTAAAAAGGGCTTGTGAATTGGCCAAGAGGAGTCTTTCCTCTGATAAAAGAGCTGAATTTCTTGTTGACCTTGGGTACAAGGATGGTAAGGACACTAGTTTCAGATGTATTATGACCCGTGATCAGTTTGAAAGGATGAATGAAGATCTATTCCAGAAGTGTGTGCAAATTATAACAAAATGTCTGACCAATGCTAAAACAGGTAAATGTGATGTTAAGAGCATTGTGCTTGTTGGTGGGTCTACAAGGATACCAAAAGTACAAGAGCTTCTGATGAATTACTTCAATCAAAGGGATGTTTTCAAAAGAATTAACCTGGACCAAGCCGTTGCTTACGGGGCTGCAATACAGTGCGGAATTTTGAGGGGAGAGAAGAAAGTAGAGGACATGCTTGCCATTGATATTACCCCCTTCTCCCTAGGATTGGAGAAAAAAACATCAGAGAGAAGTTTCTACCCTTTATCCGATTCCACCGAGACAATAAAAAGAGGTTTAATGCATGTTGTTATTCCTAGGAACAAAGAGTATCCTACTGTGATAGTGGAAAAAACTTACTGTGAGAAGGAACTGATATTGCACTTTCCAATTTATGAAGGTGAGAGTGATAAATCGAAAGAAAACACTTTTCTTGGTGAATTAGTGTTGGATTTCTGCGGTTTTGCTGAGAAAGAGTTTAGCATGATTACCATTGTGTTCAGTATTGATGAAGATGGTATTCTGAGAGTCTCAGCAGAGGACAGCACTATTGGACTTAAGAACGAGATTGTTATTGGTAGTGCAAAACAAGAGGAGATTGAAAACATGACGAAGGCCCTAAAGAAGACTGTCAAGTGGTTGGAAGAGGAAGAAGACCCTGACCATGGTGACCTTGAAGAAAAGATGAAGCAGATAAGTTGCAATTTCATATAA 1380 0.3964 MVKEGGPKPLIAVNYNGEETVFRPEDISAMIIQKLKNMAEEFLGMTVIDXAGLACGLNVLRLINDTTASALTCAYDKIVSSQQNVLIFDFGGGSLDVAVTDIDGGRGGGVIVAPKATMGDKNLGGLDLDKRMVDYFVKKIRNEVGLDITENWKALGKLKRACELAKRSLSSDKRAEFLVDLGYKDGKDTSFRCIMTRDQFERMNEDLFQKCVQIITKCLTNAKTGKCDVKSIVLVGGSTRIPKVQELLMNYFNQRDVFKRINLDQAVAYGAAIQCGILRGEKKVEDMLAIDITPFSLGLEKKTSERSFYPLSDSTETIKRGLMHVVIPRNKEYPTVIVEKTYCEKELILHFPIYEGESDKSKENTFLGELVLDFCGFAEKEFSMITIVFSIDEDGILRVSAEDSTIGLKNEIVIGSAKQEEIENMTKALKKTVKWLEEEEDPDHGDLEEKMKQISCNFI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6270g00001 459 ProSitePatterns Heat shock hsp70 proteins family signature 3. 232 246 IPR018181 -
Trme6270g00001 459 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 283 434 IPR029047 -
Trme6270g00001 459 Gene3D - 171 256 - -
Trme6270g00001 459 PANTHER HEAT SHOCK PROTEIN 70KDA 5 432 IPR013126 GO:0005524|GO:0140662
Trme6270g00001 459 Pfam Hsp70 protein 6 433 IPR013126 GO:0005524|GO:0140662
Trme6270g00001 459 Coils Coil 419 439 - -
Trme6270g00001 459 Gene3D - 86 164 - -
Trme6270g00001 459 SUPERFAMILY Actin-like ATPase domain 82 278 IPR043129 -
Trme6270g00001 459 SUPERFAMILY Actin-like ATPase domain 5 76 IPR043129 -
Trme6270g00001 459 Gene3D - 8 85 - -
Trme6270g00001 459 PRINTS 70kDa heat shock protein signature 229 245 - -
Trme6270g00001 459 PRINTS 70kDa heat shock protein signature 93 103 - -
Trme6270g00001 459 PRINTS 70kDa heat shock protein signature 261 281 - -
Trme6270g00001 459 PRINTS 70kDa heat shock protein signature 286 305 - -
Trme6270g00001 459 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 276 455 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6270g00001 Trme-Chr6270 444 1823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6270g00001 1 444 Calmodulin-binding Proteins AT3G12580 42.161 9.66e-106 326