Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62677g00001 ATGCTTGATAGTATTGTGCCTCGTGAGGATTGGGAAAGGATGCTAATTGAGAAAGAGATATTTGGGAAGGAAGCATTGAACGTTATAGCTTGTGAAGGTTGTGAGAGAGTAGAGAGGCCAGAAACATATAGGCAGTGGCAAGTTCGTATTCTCCGAGCTGGGTTTTTGCAACAGACATTTGGCAAGAACACGGTGGAAAGAGCAGTGGAGAAAGTAAAGTCTAGTTACCACAAGGATTTTGTAATCGACGAAGATG 256 0.4297 MLDSIVPREDWERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQVRILRAGFLQQTFGKNTVERAVEKVKSSYHKDFVIDED 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62677g00001 85 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 72 IPR005202 -
Trme62677g00001 85 ProSiteProfiles GRAS family profile. 1 85 IPR005202 -
Trme62677g00001 85 Pfam GRAS domain family 1 84 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62677g00001 Trme-Chr62677 336 591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62677g00001 1 85 GRAS Transcription Factor Family AT2G37650 62.353 2.18e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme62677g00001 GRAS 4e-17 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62677g00001 - - ccaj:109816616 155.992