Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62610g00001 GAAGTTTTGCATGGTAAAAGAGGGGGGTATCTTGAGTGGAATGTAAGGGTGAAAATAGCAATTGAAGCTGCTAAAGGACTATGCTATTTGCATCATGATTGTTGTCCTATGATTGTTCATAGAGATGTTAAGTCAAATAATATTTTGTTGGATTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTTGCAAGAGAATAATGGTGGGACTTCTGAATGCATGTCTTCTATTGTTGGTTCTTATGGCTACATTGCTCCAG 274 0.3759 EVLHGKRGGYLEWNVRVKIAIEAAKGLCYLHHDCCPMIVHRDVKSNNILLDSEFEAHVADFGLAKFLLQENNGGTSECMSSIVGSYGYIAP 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62610g00001 91 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62610g00001 91 PANTHER LEUCINE RICH REPEAT KINASE 2 2 91 - -
Trme62610g00001 91 SUPERFAMILY Protein kinase-like (PK-like) 3 91 IPR011009 -
Trme62610g00001 91 Pfam Protein kinase domain 12 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62610g00001 91 ProSitePatterns Serine/Threonine protein kinases active-site signature. 38 50 IPR008271 GO:0004672|GO:0006468
Trme62610g00001 91 FunFam Os07g0541700 protein 2 85 - -
Trme62610g00001 91 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62610g00001 Trme-Chr62610 109 382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62610g00001 1 91 Receptor kinase-like Gene Family AT5G65700 80.220 1.44e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme62610g00001 Pkinase 8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62610g00001 - - nnu:104599813 161.77