Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62576g00001 AACAAGCCATACCCAAAATCACGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTGGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGTTGGGAGAAGGAAAATGTTTCCAGTGAAGCATTGGAAGCTGCTCGTATCGCTTGCAACAAGTATATGTCGAAATTTGCTGGAAAGGATGCATTCCATTTGAGGGTTAGAGTACATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTCGGAAAGCCACTCGGTACTTGTGCTAGAGTTGCTATTGGTCAGGTTCTTCTTTCTGTCCGTTGTAAGGACACCAATAGCCATCATGCTCAAGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTCAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTGTTGATTACCTCAAGTACAAGTCAGAGAACAGAATTCTGCCTGATGGTGTGAATGCCAAGTTGTTTTCTTGA 567 0.4356 NKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDTNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRVDYLKYKSENRILPDGVNAKLFS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62576g00001 188 Gene3D Ribosomal protein L10e/L16 1 188 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 PANTHER 60S RIBOSOMAL PROTEIN L10 1 187 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 ProSitePatterns Ribosomal protein L10e signature. 95 116 IPR018255 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 Pfam Ribosomal protein L16p/L10e 2 153 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 NCBIfam 50S ribosomal protein L16 1 161 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 CDD Ribosomal_L16_L10e 28 153 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 PIRSF RPL10a_RPL10e 1 169 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trme62576g00001 188 FunFam 60S ribosomal protein L10 1 186 - -
Trme62576g00001 188 SUPERFAMILY Ribosomal protein L16p/L10e 1 160 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62576g00001 Trme-Chr62576 1 816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62576g00001 2 188 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 88.770 1.36e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62576g00001 K02866 - pvy:116105818 377.481