Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6250g00001 ATGGCAGGTTTGGCTCCAGAAGGATCACAATTTGACGCTCGTCATTATGACACTAAGATGAATGAACTGCTTGCCAGTGATGGGCAAGATTTCATCACCTCATATGATGAAGTCTATGATAGCTTTGATTCTATGGGGCTGCAAGAAAATCTTCTTCGAGGCATATATGCTTACGGTTTTGAGAGACCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTCATTCAACAAGCTCAGTCGGGAACCGGAAAGACAGCAACATTCTGTTCTGGAATTTTACAGCAGCTTGATTATGGATTGGTTCAGTGCCAAGCTTTGGTTTTGGCACCAACAAGAGAACTAGCTCAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTNGGGAGGATCAGCGCATTCTCCAAGCTGGTGTTCACACTGTTGTTGGTACTCCAGGGCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGTTCTGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGACGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTACTACCAGGCAAAATTCAGGTTGGAGTATTTTCTGCTACAATGCCACCGGAAGCACTTGAGATTACTAGAAAGTTCATGAATAAGCCGGTGAGAATTTTGGTGAAGCGTGACGAGCTGACTCTTGAAGGTATCAAGCAGTTTTATGTCAATGTCGATAAGGAAGAATGGAAACTAGAGACATTATGCGACCTCTACGAGACTCTGGCCATCACTCAAAGCGTCATTTTTGTGAATACAAGGCGCAAAGTGGACTGGCTCACTGACAAAATGCGAAGCGCGGATCATACAGTCTCGGCCACTCACGGTGACATGGACCAGAACACTAGGGATATCATCATGCGTGAGTTCCGGTCTGGCTCTTCTCGAGTTCTTATTACTACCGACCTCCTTGCNCGTGGTATAGATGTGCAGCAAGTTTCTTTGGTCATAAACTATGATCTCCCTACTCAACCTGAAAACTATCTCCACCGTATAGGTCGTAGTGGACGATTTGGACGAAAAGGTGTTGCTATAAACTTTGTAACATTGGATGATGCTAGAATGCTGGCTGATATTCAGAAATTCTACAATGTCAGTGTAGAGGAGCTTCCATCAAATGTTGCTGAT 1233 0.4444 MAGLAPEGSQFDARHYDTKMNELLASDGQDFITSYDEVYDSFDSMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVXEDQRILQAGVHTVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSADHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLADIQKFYNVSVEELPSNVAD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6250g00001 411 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Trme6250g00001 411 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Trme6250g00001 411 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Trme6250g00001 411 Gene3D - 249 411 IPR027417 -
Trme6250g00001 411 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Trme6250g00001 411 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 396 - -
Trme6250g00001 411 CDD DEADc_EIF4A 45 242 - -
Trme6250g00001 411 SMART helicmild6 293 374 IPR001650 -
Trme6250g00001 411 Gene3D - 30 248 IPR027417 -
Trme6250g00001 411 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 411 IPR001650 -
Trme6250g00001 411 SMART ultradead3 59 256 IPR014001 -
Trme6250g00001 411 FunFam Eukaryotic initiation factor 4A-III 248 411 - -
Trme6250g00001 411 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Trme6250g00001 411 CDD SF2_C_DEAD 253 383 - -
Trme6250g00001 411 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Trme6250g00001 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6250g00001 Trme-Chr6250 1 1888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6250g00001 1 411 Eukaryotic Initiation Factors Gene Family AT1G72730 88.350 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6250g00001 K03257 - gmx:100809395 787.719