Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62398g00001 ATGTGTTCTGTAGAGACTGAAAAGGGAATATTTGATGCCATATTGGAAGGTCATATTGATTTTGACAGTGATCCGTGGCCTAAAATATCAGACAGCGCCAAGGATCTTGTTCGTAAAATGCTTATACAGGATCCAAAGAAACGCATAACTTCCGCACAGGTTCTAGAGCATCCATGGATTAAAGGTGGCAATGCTTCTGATAAGCCAATAGACAGCGCAGTTCTTTCTAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCATTGAAG 279 0.3943 MCSVETEKGIFDAILEGHIDFDSDPWPKISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKGGNASDKPIDSAVLSRMKQFRAMNKLKKLALK 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62398g00001 93 SUPERFAMILY Protein kinase-like (PK-like) 6 72 IPR011009 -
Trme62398g00001 93 Pfam Protein kinase domain 14 60 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62398g00001 93 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 88 - -
Trme62398g00001 93 ProSiteProfiles Protein kinase domain profile. 1 60 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62398g00001 93 Gene3D Transferase(Phosphotransferase) domain 1 2 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62398g00001 Trme-Chr62398 386 800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62398g00001 4 93 EF-hand Containing Proteins AT1G50700 81.319 1.49e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme62398g00001 Pkinase 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62398g00001 K13412 - gmx:547888 172.555