Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6235g00001 ATGGTGGGGATATGGGGAATGGGGGGATCTGGCAAAACAACCACAGCCAAAGCTATCTACAATCGAATCCATCGTAGATTCAACGGTAGAACAAGTTTCATTGGAAATATTCGAGAGATTTGTGAAAATGATAGTAGGGGAATTATTCATATACAACAACAACTTCTTTCTGATGTTTTGAAAACAAACGAGAAGATACATAGCATTGAATTGGGGATAACTAAGATCGAGAAAACACTTCAGGGAAAAAAGGCTTTCGTCGTACTTGATGATGTGACCAAGTCTGAGCAATTAAAAGCCATGTGTGCAAATCATAAGTTGTTTTGTTCAGGAAGTGTAATGATTATTACAACTAGAGATGCACGCCTTCTCAATTCAATTCGTGCTAAACATGTCTTCACCATGACGGAAATGGACGAAAACCAATCCCTTGAACTTTTCAGTTGGCATGCTTTTCAACAACCAAGTCCTAGAGAAGGTTTTAGTGAACTCTCTAGAAATGTAGTTGCTTATTGCGGAGGATTACCCCTTGCACTTGAAGTCCTTGGATCTTACTTAACTGATAGGACGAAACAAGAATGGAGAAGTGCACTATTAAAATTAGAGAAAATTCCCAACGATCAAGTGCAACAGAAACTGAGAATCAGCTATGATGGTTTAGAAGATCATACRATAAAGGATATATTTCTTGACATATGTTGTTTCTTCATCGGAAAGAACAGAGCTGATGTTACAGAGATACTTAATGATTGTGGATTTTATGCTGATATTGGAATAGCTGTACTCATAGAGCGGAGCCTCATAAAAGTTGAAAAGAAGAATAACAAGCTTCAAATTCATGATTTACTACGGGATATGGGAAGAGCAATTGTTGGAGAAAGTTCGCCAAAAAATCCTGGGGAGCATAGTCGATTGTGGTTTCCCAATGATGTGGTGGATGTTTTGACAAAAAATATTGGAACAGAAACTGTAGAAGGATTGGTTTTGAAGTCACACAGAATTGACAAATTTTGTTTCACTACTAATTCTTTCAAAAAGATGAAGAAGCTCAGACTTTTACAACTTGATCATGTTGACCTCACTGGGGATTTTGAGTATCTTTCCAAACAACTTAGATGGGTCAATTGGCAACGATCTACCTTCAACTATATACCTAATGACTTGGACTTGGGAAATCTCATTGCTTTTGAGTTAAAGTATAGCAATGTTAAACAGGTTTGGAAGGAAACCGAGTTGATGGAGAAGCTAAAAATTCTCAATCTTAGTCATTCTATGCACTTGAAAAGCACCCCTGACTTTTCAAAATTACCGAACCTAGAAAAACTCATTATGAAGGATTGTCAAAGTTTGTCCGAGGTACACCCNTCCATTGGAGATCTCAAGAATATTCTTCTGATAAATTTGAAGGACTGTACAAGTCTCGGCAATCTCCCTATAGAGATATATCAATTGGCATCCGTGAAAACTTTGATCCTTTCGGGTTGTCCAAATATTGACAAATTGGAAGAAGTTATAGGGAAAATGGAATCCTTGACAACTCTAGCTGCAAAAAATACTGGTGTCAAA 1566 0.3723 MVGIWGMGGSGKTTTAKAIYNRIHRRFNGRTSFIGNIREICENDSRGIIHIQQQLLSDVLKTNEKIHSIELGITKIEKTLQGKKAFVVLDDVTKSEQLKAMCANHKLFCSGSVMIITTRDARLLNSIRAKHVFTMTEMDENQSLELFSWHAFQQPSPREGFSELSRNVVAYCGGLPLALEVLGSYLTDRTKQEWRSALLKLEKIPNDQVQQKLRISYDGLEDHTIKDIFLDICCFFIGKNRADVTEILNDCGFYADIGIAVLIERSLIKVEKKNNKLQIHDLLRDMGRAIVGESSPKNPGEHSRLWFPNDVVDVLTKNIGTETVEGLVLKSHRIDKFCFTTNSFKKMKKLRLLQLDHVDLTGDFEYLSKQLRWVNWQRSTFNYIPNDLDLGNLIAFELKYSNVKQVWKETELMEKLKILNLSHSMHLKSTPDFSKLPNLEKLIMKDCQSLSEVHPSIGDLKNILLINLKDCTSLGNLPIEIYQLASVKTLILSGCPNIDKLEEVIGKMESLTTLAAKNTGVK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6235g00001 522 Gene3D - 137 221 IPR042197 -
Trme6235g00001 522 SUPERFAMILY L domain-like 337 517 - -
Trme6235g00001 522 Pfam NB-ARC domain 2 210 IPR002182 GO:0043531
Trme6235g00001 522 Gene3D - 1 133 IPR027417 -
Trme6235g00001 522 Gene3D Ribonuclease Inhibitor 314 520 IPR032675 -
Trme6235g00001 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 232 IPR027417 -
Trme6235g00001 522 PRINTS Disease resistance protein signature 1 16 - -
Trme6235g00001 522 PRINTS Disease resistance protein signature 172 186 - -
Trme6235g00001 522 PRINTS Disease resistance protein signature 79 93 - -
Trme6235g00001 522 PRINTS Disease resistance protein signature 411 427 - -
Trme6235g00001 522 FunFam Disease resistance protein (TIR-NBS-LRR class) 139 221 - -
Trme6235g00001 522 SUPERFAMILY "Winged helix" DNA-binding domain 208 315 IPR036390 -
Trme6235g00001 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 504 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6235g00001 Trme-Chr6235 1 1874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6235g00001 2 494 WRKY Transcription Factor Family AT5G45050 29.730 2.38e-63 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6235g00001 - - vvo:131619861 805.053