Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6221g00001 ACGACTCTAAGGGACTTTGTTACCATAAGGCATCCTGTATATGATATTCATCAAAAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCAGACATTGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGATTGACGTGGTTGAAAGTTTCATGTTTGCAATTCCTGCTGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCTCCACTATTGTCACCAATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAATTGCAGGAGCTAGCAATTTTGCTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTACATGCGGTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACGTTAATGCAGCGTTTTAACACAAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACGGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGCCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGAGCACTTGATGATTTAGTTATACAAAGTGGGGGATATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTGTTTTCAGGTCATAAAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAACCAGAACAGTGGAGAAGTTTCTGTAACTAATGCAGATGTGGAAGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCACTAAAGAAAGTTGAACTGGAAGAAGCTGTGGATAATCAGGAATTCACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAGTATGTAAATGAGGATGATGAGCCTCAAGAATTAGGTGACTCTGTTTCCACTTTGAGTAAAGAGAATACATTAATGCTAAATGGAGCTGATCCTATGGAAGATAAAACACCCTCTATTGTTGCCAAAGAAGATGATGTTGACATGCTGGAAGATGTGAAACAGATGGCAGAAGCTGCAGCTGCAGCAGGACAGGCTTTATCAGCCTTTGAAAATGAGCTACGCCCTATTGACCGATATGCCATTCGTTTTCTAGAGATGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGACACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAGGCCGAAATTGACGAAGATGAAGAGCCTCTTGTATATGAAAGTATGCACCTCACTGCCCCCTCTGATTCAATTTTGTTTTGA 1512 0.414 TTLRDFVTIRHPVYDIHQKKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHKTLSIKDTPKEKNQNSGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYVNEDDEPQELGDSVSTLSKENTLMLNGADPMEDKTPSIVAKEDDVDMLEDVKQMAEAAAAAGQALSAFENELRPIDRYAIRFLEMWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESMHLTAPSDSILF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6221g00001 503 Coils Coil 459 479 - -
Trme6221g00001 503 MobiDBLite consensus disorder prediction 342 370 - -
Trme6221g00001 503 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 90 339 - -
Trme6221g00001 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 303 IPR027417 -
Trme6221g00001 503 Pfam Helicase conserved C-terminal domain 122 232 IPR001650 -
Trme6221g00001 503 PANTHER HELICASE SRCAP-RELATED 1 491 - -
Trme6221g00001 503 SMART helicmild6 149 232 IPR001650 -
Trme6221g00001 503 Gene3D - 92 338 IPR027417 -
Trme6221g00001 503 MobiDBLite consensus disorder prediction 354 368 - -
Trme6221g00001 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 123 273 IPR001650 -
Trme6221g00001 503 CDD SF2_C_SNF 118 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6221g00001 Trme-Chr6221 1 1512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6221g00001 69 262 RAD5 or RAD16-like Gene Family AT5G43530 30.986 4.83e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6221g00001 K11661 - gmx:100795613 854.358