Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62198g00001 ATGTCTGATGATGAATCACAAAGTGCGACGATTAAGGCTTTTGAAAATGGAGCTGATGAATTTTGGTGTAAGCCTTTGGATGAGAATCGTATTAAGTACATGTGGCGGTTAGTTCAAAAGAAGGAAATTGAGAATAAAAATAAACAAGAAGATGATTGTGTTGGTGAACCATCGGAGGTAAGAAAAGTTCTTAAAAAAATGGGGAGAGATAATCTTGAAAATACAACAAATGGTTGTGTTGGTGAACCATCGGAGGTAAGAAAAGTTCTACAAACCAGGACTCATATAAGATGGACAGAAAAACTTCGTGAACTATTTATAAATGTTGTGAATCAACTTGGCCCTGCTGAGGCAACGCCAAAAAGGATTCTGGAACTGATGAATGTTCCTGGTTTGACAAAACCACAAGTCGCTAGTCACTTACAG 426 0.3756 MSDDESQSATIKAFENGADEFWCKPLDENRIKYMWRLVQKKEIENKNKQEDDCVGEPSEVRKVLKKMGRDNLENTTNGCVGEPSEVRKVLQTRTHIRWTEKLRELFINVVNQLGPAEATPKRILELMNVPGLTKPQVASHLQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62198g00001 142 SUPERFAMILY Homeodomain-like 91 142 IPR009057 -
Trme62198g00001 142 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 142 IPR017930 -
Trme62198g00001 142 Gene3D - 90 142 - -
Trme62198g00001 142 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 51 142 IPR044841 GO:0003700|GO:0006355
Trme62198g00001 142 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Trme62198g00001 142 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Trme62198g00001 142 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 142 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62198g00001 Trme-Chr62198 225 763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62198g00001 1 142 Response Regulator Gene Family AT2G01760 30.000 3.33e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme62198g00001 Myb_DNA-binding 2.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62198g00001 - K14491 pvu:PHAVU_011G008200g 97.0561