LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme6208g00001	ATGCATGTCATTTTTACCTGCAGGCCTTCAAGTGCAAGAAACTCGGTTAGCTCGCCGATAATTGCTAGGAATTCTTCTTATGGACGGTCACCGTACTCACGTAGATTGTCCGATTTCTCTACATCAGATTTTAGTTTGTCCCTTGATGCATCATATCCAAATTACAAGCATGAAAAGCTTGCCTTCAAAGATCAAGCTGGTTCCTTCTGGAGACTAGTAAAAATGAACTCTCCTGAATGGCTCTACGCTTTAATTGGTTCAATCGGTTCAATTGTTTGTGGATCGCTTAGTGCTTTCTTTGCTTATGTTCTTAGCGCTGTCCTCAGTGTCTATTACAATCCGGACCACAAACACATGATCCGAGAAATAGATAAGTACTGCTACTTGTTGATTGGTCTTTCATCAACTGCACTTATCTTCAACACATTGCAACACTTCTTCTGGGATATTGTCGGGGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGACTGCGGTGCTTAAGAACGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTTCTGCAAGGCTGGCTCTTGATGCCAATAATGTCAGATCAGCCATTGGAGACCGAATTTCAGTCATTGTGCAGAATACTGCACTTATGCTTGTTGCTTGTACTGCAGGTTTTGTGTTGCAGTGGCGTCTCGCTCTTGTCCTCATTGCTGTATTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTAGAAGCTGCTCATGCCAAGGCCACACAACTAGCAGGGGAGGCTATAGCTAATGTTAGAACTGTTGCAGCCTTCAATTCAGAATCGAAAATTGTTCGCCTTTTTGCTTCTAACCTTGAAACACCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCCGGAAGCGGATATGGAATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTCGGTCTTTGGTATGCTTCTTGGCTAGTGAAACACGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTCATGGTCTCTGCCAATGGTGCTGCCGAGACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGATCAGTCTTTGATCTCCTCGACCGTCGAACCGAGATTGAACCAGATGATCAAGATGCTACTCCTGTTCCTGATCGTCTCCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTATCCCACTAGACCAGATATGCCGGTTTTCCGTGACCTTAATCTTCGTATCCGAGCTGGCAAAACTCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCGGTGATTGCACTTATACAGAGATTCTATGATCCAACGTCTGGCCGGGTAATGATTGATGGAAAAGACATCAGAAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTAGTACCTCAAGAGCCATGCCTCTTTGCTACTACTATTTATGAAAACATTGCATATGGCCATGACTCAGCAACAGAAGCCGAGATAATCGAAGCAGCAACACTTGCTAATGCTCACAAGTTCATATCTTCTCTACCGGACGGATACAAAACATTTGTAGG	1619	0.441	MHVIFTCRPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASYPNYKHEKLAFKDQAGSFWRLVKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHKHMIREIDKYCYLLIGLSSTALIFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARISARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSESKIVRLFASNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRIRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFVG	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme6208g00001	540	Gene3D	-	398	540	IPR027417	-
	Trme6208g00001	540	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	98	540	IPR039421	-
	Trme6208g00001	540	SUPERFAMILY	ABC transporter transmembrane region	71	391	IPR036640	GO:0005524\|GO:0016020
	Trme6208g00001	540	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	398	540	IPR027417	-
	Trme6208g00001	540	Gene3D	ABC transporter type 1, transmembrane domain	57	394	IPR036640	GO:0005524\|GO:0016020
	Trme6208g00001	540	Pfam	ABC transporter transmembrane region	85	354	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Trme6208g00001	540	FunFam	ABC transporter B family member 19	373	395	-	-
	Trme6208g00001	540	Pfam	ABC transporter	426	520	IPR003439	GO:0005524
	Trme6208g00001	540	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	84	371	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Trme6208g00001	540	FunFam	ABC transporter B family member 1	63	372	-	-
	Trme6208g00001	540	CDD	ABC_6TM_Pgp_ABCB1_D2_like	74	389	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme6208g00001	Trme-Chr6208	1	1741	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme6208g00001	6	540	Calmodulin-binding Proteins	AT2G36910	88.246	0.0	984

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme6208g00001	K05658		-	gmx:100814667	988.408