Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme62031g00001 ATGACAATGGCTGCCCCAGGGCACCTCAACGTCACCGAATCTCCTTCCCGTGGATCCCGCAGCGTTGATTGCTTCGAGAAATTGGAGCAAATCGGCGAAGGAACCTATGGTCAGGTTTACATGGCCCGAGAGATCGAAACCGGTGAAATTGTTGCTCTGAAGAAAATAAGAATGGACAATGAGAGAGAAGGG 192 0.5052 MTMAAPGHLNVTESPSRGSRSVDCFEKLEQIGEGTYGQVYMAREIETGEIVALKKIRMDNEREG 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme62031g00001 64 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Trme62031g00001 64 Pfam Protein kinase domain 25 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62031g00001 64 ProSiteProfiles Protein kinase domain profile. 25 64 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme62031g00001 64 MobiDBLite consensus disorder prediction 1 21 - -
Trme62031g00001 64 Gene3D Phosphorylase Kinase; domain 1 12 64 - -
Trme62031g00001 64 SUPERFAMILY Protein kinase-like (PK-like) 20 61 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme62031g00001 Trme-Chr62031 13 843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme62031g00001 1 64 Core Cell Cycle Gene Families AT5G10270 81.538 7.66e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme62031g00001 Pkinase 3.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme62031g00001 K08819 - gmx:100793565 119.398