Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6201g00001 ATGTTAGGAGAAGAAGGAAAAGAGAAACCCTCTTCTATCAGGAGAACCTATTCACGTTCAGTTTCATGGACAGATCGTTCTCCGAATAGCCGTAAACCGCCGCCTGGAAATAGTAAACCAAGACCACTTTTACCACCTCTTCAACCTCTCTCAATCAACAAACGTAGCGTTGAAGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCTCTTCCACAAACTCCAAGAGGGTCTATTACAATCAATGAACCTACCAAAGATTTTCAGTTCAAAAGGGATAAGTTAGCTTTCTTTGACAAAGAGTGTTCTAGAATTGCAGAACATATTTACTTGGGAAGTGACACGGTTGCTAAAAACCATGAACTTCTTAGACAGAAAGGAATAACTCATGTGCTTAATTGTGTTGGATTTGTTTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACACTTTGGTTGCAGGATAGTCCAACAGAGGATATAACTTGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGCGGTCGTGTTCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCGACCGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGACAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAAACTGCTAGAGGAGTCACAAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAGTTCTATTCTAAGGATGTATCGAATGGCTCCTCACTCTCCTTATGACCCTCTTCATCTTGTTCCTAAGATGGTTAACCAACCAGGTTCATTAGCACTTGATTCTCGCGGTGCTTTCATTGTTCATGTTCCTTCTGCTATTTATGTTTGGATTGGGAAAAATTGTAACTTGTTTATGTCATGCAATGCAAAGAGTGCTGCTTTTCAGGTCGTGCGTTACGAGGGAGCAAAGGGTCCAATTCTGAGCATCCATGAAGATCAAGAATCAACCGAGTTTTGGGTTGCTCTTTCTGATGAGCAGCGTTTGTCAGATGATTCTGATAAACAACTGGTATTGCCTTCTGAAAAGATGGAGATTGCTAGTCTAAGAAAAGTTGATGCTTATGATTTGGATTTTGAGATTTTCCACAAGGCAGTTTCTGGTGGGGTTGTTCCGCCTTTTTCTGTAGCTAATGCTGGATCAGAAACTTGTCTTCCTGCTAAAGAACATGGTTGGGCAAGATTGAGGAAGAAATTTGCCAGTGGTGACATGAAAGAAATCTTAACCTCCCCTAAGTGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGATGAGGATGATGATCCTTTGTCAGCTTCACCATCATCAAATCATCCCAGTGACTGTGGTTCCCCGGATTCCTTTGAATGTTATCCAACCAGCTTAGGCAAGGCAAAAGATACTGTTGAAGACATGGACTTGTCTGAATCTGATCATGGTGTTGCTTCTTTGCTGCCACTATCTCCTTCTTTTCCTTGTTTTCTAAGCAGCAGCCCAAAATTCAATTACAAGTCGCCAACACTTTCACCTTCAAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACCTGTCATTCATGTCTTCTCGGCAGCCATCCCCATCTGGCCACGAATCAGTTGAACCATTTTATGTTAAAGATGTGTCTTTCTCAACAAATTCCTCTTTACTTAACAAAGACGTTCTCTCTTTGCCGTCAGAGTCATTTTCGACTGATCACAC 1802 0.4095 MLGEEGKEKPSSIRRTYSRSVSWTDRSPNSRKPPPGNSKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSITINEPTKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPSSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYEGAKGPILSIHEDQESTEFWVALSDEQRLSDDSDKQLVLPSEKMEIASLRKVDAYDLDFEIFHKAVSGGVVPPFSVANAGSETCLPAKEHGWARLRKKFASGDMKEILTSPKWKCDVIMEEEKQDFVDEDDDPLSASPSSNHPSDCGSPDSFECYPTSLGKAKDTVEDMDLSESDHGVASLLPLSPSFPCFLSSSPKFNYKSPTLSPSSSDYASSFTFSPSSTNWSDLSFMSSRQPSPSGHESVEPFYVKDVSFSTNSSLLNKDVLSLPSESFSTDHT 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6201g00001 601 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 245 IPR029021 -
Trme6201g00001 601 MobiDBLite consensus disorder prediction 33 47 - -
Trme6201g00001 601 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 223 IPR000387 GO:0016311|GO:0016791
Trme6201g00001 601 PANTHER MKPA PROTEIN 11 571 - -
Trme6201g00001 601 Gene3D Severin 256 354 IPR029006 -
Trme6201g00001 601 MobiDBLite consensus disorder prediction 15 32 - -
Trme6201g00001 601 CDD DSP 104 238 - -
Trme6201g00001 601 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
Trme6201g00001 601 Gene3D Protein tyrosine phosphatase superfamily 83 245 IPR029021 -
Trme6201g00001 601 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Trme6201g00001 601 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Trme6201g00001 601 MobiDBLite consensus disorder prediction 1 48 - -
Trme6201g00001 601 SUPERFAMILY Actin depolymerizing proteins 250 350 - -
Trme6201g00001 601 MobiDBLite consensus disorder prediction 449 472 - -
Trme6201g00001 601 SMART dsp_5 103 242 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6201g00001 Trme-Chr6201 204 2005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6201g00001 1 139 Protein tyrosine phosphatase (PTP) family AT3G55270 40.541 1.85e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6201g00001 - - gmx:100775448 873.233