Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme61g00002 ATGGTTTACAGAGGAAAGGGTGTGGTTGATGTTGCCTTCGACGGCGTTGCTGATATAGGTCCTGGAAAAGAGAATGTTTGTATCAAGGTTAGGGTTCTTCGTTTTTGGAGGGTTCCTGCTTTCCTCAATCCGAGTGAGGCTAGCTCTGTTGAGATGGTTCTCGTCGATGAGAATGGGGCAAAGATACACGCTACCATTAGGAAGCAGCTTATTAATACGTTTGAAACCATGGTTGAAGAAGGAGGAGTCTATGAGATGTCTCATTTCTCTGTTTTTCCTCAGAGTGGTAGCTATCGTACTACTCTTCACCCATACAAGCTTTTGTTCCAGTTGAAGACAAAGGTTGCAGTTTGTGAGAGTTCAGATATAACTCATTTTGGATTAAATGTTACAAGTCTTGCTGAGATTAGTGCTTATACTCATGACTATGAGTTTCTGGTTGATGTGATTGGTGTGATGACTGGTATATCTGCTGAGAAGGAGTATGTTCGTGAAGGGAAAATTACCAAAATGGTGGTTATTGAGTTAACTGATCATAGTGGCAAATGCGAATGTGCTCTGTTTGGAGAATATGTTGATGAGTTGAAGAAGAAAATGGGGAAATCTTCCGGTGGTTTGCCTATTGTGGTTGTCCAATTTGCTAAAGTGAAAATTTTTAGAGACAAAGCGTCTATTCAAAATGTGCTGCACACTACTAGGATATTGATCAATCCTGATATTCCTGAAGTTGAAACCTTCAAAAATAGTATTGCAGTGCATGGTATAGAGTATGATACTACTGTTCCACTTATTGGTGGGTGTGCTAAGCCATCTCTTGAAGAAGAACTTCTTCGTTTGCATCCAAAGAAATCTTTGGCCGAGCTCAGTAGCCTGTGTGAGGATGGTGTGTTTGTAGTATGTGCTGAGGTTATGCGTGTGGTTGATGGACAAGATTGGTGGTATCCTGCTTGCAAGTGTCACAAAGCTGTTGTCCCTGATTCAGGATCTTATTTCTGCAGTGCTTGCGATAGGCGTGTGTTTCAAGTTATACTGAGGTTTAGGGTGAAGTTTGAAGTTGCTGATGGTGAAGCCAGTTGTGTCTTTGTTCTATTTGATTCTGATATGAGTTACATGCTTGAAAAATCTTGTGCTTTTTTCGTTGCTCAGTCAAAGGCCAAGAGTGCTGGTGTACATCCAATTGAATTTGATAGTTTGGTTGGAAAGAGGATGTTGTTTTCTATTGATAAACTGGTTAAGCATTCGGGTGTAGCTGATGGATCCTTCAGGGTGAAAAGAGTCTGCATGAATCCTACTATTATCAAGGAGTTTTGTGCTGAGTGTGGATTTTGTACTCCATCAAAGGCAATGTCTCCTGTCGTTGACATCGACTCTGATGGATTGAGCGATGATGTTAATTCTGTTGATGATGATCAGTCCCTTGAGTTTGTTAAAGATCTAGTTGTAATTCCACCAGCTAGCGTTGAAGTGGATGAATGTGACAGTGATGCTCCTTTTACTGTTAAGAGGAATTTAACTAAAGCTTTTGATGGAGTTGCTAAGTCAAAGCGCAATGCTCGCCTGAAAAAAGTGAAGATTGAAAAGGACTAG 1587 0.4077 MVYRGKGVVDVAFDGVADIGPGKENVCIKVRVLRFWRVPAFLNPSEASSVEMVLVDENGAKIHATIRKQLINTFETMVEEGGVYEMSHFSVFPQSGSYRTTLHPYKLLFQLKTKVAVCESSDITHFGLNVTSLAEISAYTHDYEFLVDVIGVMTGISAEKEYVREGKITKMVVIELTDHSGKCECALFGEYVDELKKKMGKSSGGLPIVVVQFAKVKIFRDKASIQNVLHTTRILINPDIPEVETFKNSIAVHGIEYDTTVPLIGGCAKPSLEEELLRLHPKKSLAELSSLCEDGVFVVCAEVMRVVDGQDWWYPACKCHKAVVPDSGSYFCSACDRRVFQVILRFRVKFEVADGEASCVFVLFDSDMSYMLEKSCAFFVAQSKAKSAGVHPIEFDSLVGKRMLFSIDKLVKHSGVADGSFRVKRVCMNPTIIKEFCAECGFCTPSKAMSPVVDIDSDGLSDDVNSVDDDQSLEFVKDLVVIPPASVEVDECDSDAPFTVKRNLTKAFDGVAKSKRNARLKKVKIEKD 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme61g00002 528 Gene3D - 13 118 IPR012340 -
Trme61g00002 528 SUPERFAMILY Nucleic acid-binding proteins 13 121 IPR012340 -
Trme61g00002 528 CDD RPA1_DBD_B_like 148 247 - -
Trme61g00002 528 Pfam Domain of unknown function DUF223 51 122 IPR003871 -
Trme61g00002 528 PANTHER OS03G0429900 PROTEIN 17 416 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme61g00002 528 CDD RPA1_DBD_A_like 27 115 - -
Trme61g00002 528 Gene3D - 121 258 IPR012340 -
Trme61g00002 528 Pfam Replication factor-A C terminal domain 303 384 IPR013955 -
Trme61g00002 528 SUPERFAMILY Nucleic acid-binding proteins 293 411 IPR012340 -
Trme61g00002 528 SUPERFAMILY Nucleic acid-binding proteins 128 256 IPR012340 -
Trme61g00002 528 Gene3D - 274 426 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme61g00002 Trme-Chr61 3861 6292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme61g00002 19 367 Core DNA Replication Machinery Family AT5G08020 23.161 2.29e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme61g00002 - - tpra:123904946 701.049