Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6196g00001 TATCTGTTTGCAGTTACCGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGTGTAATATTGATGGAGCTGATGACTGGAAGAAAAGCACTTGACGATAGCCAACCTGAGGATAGCATGCACCTTGTAGCTTGGTTCCGCAGAATGTACATAGATAAGGACTCATTCCGCAAAGCAATTGACCCGACAATCGATATCAATGAAGAAACACTTGCTAGTATTCACACAGTAGCAGAGTTAGCAAGTCACTGCAGTGCAAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCAGTGAATGTGCTTTCTTCACTTGTAGAACAATGGAAACCGTCGGATACGAATTCCGAAGATATCTATGGAATTGACCTTGACTTATCTTTACCACAAGCACTCAAGAAGTGGCAGGCTTATGAAGGTGCAAGTCAATTGGAGTCATCATCTTCTTCACTTCTTCCGAGTTTGGATAACACACAAACAAGTATACCTAATCGCCCGTATGGATTTGCCGATTCTTTCACGTCGGCAGATGGTAGGTGA 543 0.4401 YLFAVTGRVTTKVDVFSFGVILMELMTGRKALDDSQPEDSMHLVAWFRRMYIDKDSFRKAIDPTIDINEETLASIHTVAELASHCSAREPYQRPDMGHAVNVLSSLVEQWKPSDTNSEDIYGIDLDLSLPQALKKWQAYEGASQLESSSSSLLPSLDNTQTSIPNRPYGFADSFTSADGR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6196g00001 180 Pfam Protein tyrosine and serine/threonine kinase 7 99 IPR001245 GO:0004672|GO:0006468
Trme6196g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 6 116 IPR011009 -
Trme6196g00001 180 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6196g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 2 126 - -
Trme6196g00001 180 PANTHER OSJNBA0070M12.3 PROTEIN 3 180 - -
Trme6196g00001 180 MobiDBLite consensus disorder prediction 146 180 - -
Trme6196g00001 180 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6196g00001 Trme-Chr6196 1 543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6196g00001 3 103 Receptor kinase-like Gene Family AT4G02010 40.594 1.67e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme6196g00001 PK_Tyr_Ser-Thr 1.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6196g00001 K00924 - gmx:100305404 311.997