Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme617153g00001 ACTAAGGATGACCTCAAGCTTCCAACCGATGACAGTCTGCTCACTCAGATCAAGGATGGATTTGCCGAGGGAAAGGACCTAGTTGTGTCTGTTATGTCTGCTATGGGTGAGGAGCAGATTTGTGCCTTGAAGGATATTGGTCCC 144 0.4861 TKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGP 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme617153g00001 48 Gene3D - 1 47 IPR012340 -
Trme617153g00001 48 SUPERFAMILY Nucleic acid-binding proteins 1 46 IPR012340 -
Trme617153g00001 48 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 47 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trme617153g00001 48 SMART eIF_5a_2 1 44 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme617153g00001 48 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 1 44 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme617153g00001 48 FunFam Eukaryotic translation initiation factor 5A 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme617153g00001 Trme-Chr617153 2 262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme617153g00001 1 48 Eukaryotic Initiation Factors Gene Family AT1G69410 81.250 1.65e-24 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme617153g00001 K03263 - csav:115698782 96.6709