Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6165g00001 ATGCTGCTTTCTGCGTCGTCTGTAAGTAATGATAACAATGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATAATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGCAGTGGAACTTCTTCTGGTACTATCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGGTGTGGCTTACGTGTAGATCCCGGGAAATAGATGAAGAGACAGGTTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATTAATTTCCGTGACATCAACGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCGTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCTGTAACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCATCAATTGCAGCTAGCAGTGGGCATAAAGGACTGGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGCCATCTGTCATCGCTTACACTGAAAGAGAGTGAGCTGTCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGATCGGGCCTCGCTTAAAGATTCATTAGCTGCTGTCAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGTAGAGCAAAAGAAACAAATGCGGTTATGAGTGGACATGATATCAGTGCAAGTAGCATTGGTGACATGCCAGAGCTTTATGCTATGTCAAAACTTGCCTTTCGGAACTCGCGTGAAAATAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCAGAGGTGGAGGTTAATGAAAATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGGCGAAATTGACAAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAG 1254 0.429 MLLSASSVSNDNNESGIFIKQKADDNSWSHIIEALLFGSGTSSGTINWLLEELLKDKLQVWLTCRSREIDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIAASSGHKGLAGYLSEVALTSHLSSLTLKESELSKSSAELQADLTVSNVSKENIAFSEDRASLKDSLAAVRNTTQAAARIQAAFRSHSFRKRRAKETNAVMSGHDISASSIGDMPELYAMSKLAFRNSRENNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEVEVNENEDEDEDILKVFRKQKVDGEIDKAVSRVLSMVKSPDAREQYHRMLEKYRQAK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6165g00001 418 FunFam Calmodulin-binding transcription activator 4 isoform A 1 178 - -
Trme6165g00001 418 ProSiteProfiles IQ motif profile. 231 260 IPR000048 GO:0005515
Trme6165g00001 418 Pfam Ankyrin repeats (3 copies) 95 173 IPR002110 GO:0005515
Trme6165g00001 418 ProSiteProfiles Ankyrin repeat profile. 113 145 IPR002110 GO:0005515
Trme6165g00001 418 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 11 415 - -
Trme6165g00001 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 336 IPR027417 -
Trme6165g00001 418 SMART iq_5 288 310 IPR000048 GO:0005515
Trme6165g00001 418 SMART iq_5 311 333 IPR000048 GO:0005515
Trme6165g00001 418 SMART iq_5 230 252 IPR000048 GO:0005515
Trme6165g00001 418 SUPERFAMILY Ankyrin repeat 81 174 IPR036770 -
Trme6165g00001 418 ProSiteProfiles IQ motif profile. 289 318 IPR000048 GO:0005515
Trme6165g00001 418 ProSiteProfiles IQ motif profile. 312 337 IPR000048 GO:0005515
Trme6165g00001 418 ProSiteProfiles Ankyrin repeat region circular profile. 113 139 - -
Trme6165g00001 418 FunFam Calmodulin-binding transcription activator 2 288 336 - -
Trme6165g00001 418 Gene3D - 11 178 IPR036770 -
Trme6165g00001 418 Pfam IQ calmodulin-binding motif 291 309 IPR000048 GO:0005515
Trme6165g00001 418 Pfam IQ calmodulin-binding motif 314 333 IPR000048 GO:0005515
Trme6165g00001 418 Gene3D - 288 337 - -
Trme6165g00001 418 SMART ANK_2a 152 181 IPR002110 GO:0005515
Trme6165g00001 418 SMART ANK_2a 113 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6165g00001 Trme-Chr6165 248 1937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6165g00001 1 418 CAMTA Transcription Factor Family AT1G67310 64.929 2.65e-168 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6165g00001 K21596 - gmx:100786880 657.521