Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6164g00001 ATGCCCGGGACACGACAGAAAGATGCAACTGCCCAAAATTCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAACCGACAAATTCTGGTGAGCAGGTAGATCTTAATGTGGACAATGATCAAGAGGAGACCTCAGAGGAAGAGGTTGAGTATGAAGAGATAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAGGAAGAAGAGGAAGACGAAGCAGAGGAAGAGAATAAGCCCTCAGATGGTGAAGATGCGATGAGAGTGGAAGATGAGGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCGTGAAGTTTCTGAAAAAGATTTAAAGGTGTTTTGTCAATCTGTGGGAGAAGTGGCACAGGTCAGGATTATGAAAGGGAAAGAATCAAATGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATGGAGGAGCTGAACAATTCTGAATTTAAGGGGAAAAGAATAAAGTGCTCACCATCTCAAGTTAAGCATAGGTTATTCATTGGTAATGTTCCTAAAGATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCTAAAGTTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGATCCACAGGGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCACAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCAGCATCCTCTCAGGTGATCTGTTATAAGTTTTATACCTAA 861 0.4228 MPGTRQKDATAQNSESPGGNSEPEKPTNSGEQVDLNVDNDQEETSEEEVEYEEIEVEEEVEEEEEEEEEEEDEAEEENKPSDGEDAMRVEDEVEKKKHAELLALPPHGSEVYIGGIPREVSEKDLKVFCQSVGEVAQVRIMKGKESNGYAFVTFKTKELASKAMEELNNSEFKGKRIKCSPSQVKHRLFIGNVPKDWTVEDMKKVVAKVGPGVISVELLKDPQGSSRNRGFAFIEYHNHACAEYSRQKMSNSQFKLDNNAPTVSWADPRNSESSASSQVICYKFYT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6164g00001 286 SMART rrm1_1 187 264 IPR000504 GO:0003723
Trme6164g00001 286 SMART rrm1_1 110 180 IPR000504 GO:0003723
Trme6164g00001 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 184 IPR000504 GO:0003723
Trme6164g00001 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Trme6164g00001 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
Trme6164g00001 286 Coils Coil 37 80 - -
Trme6164g00001 286 SUPERFAMILY RNA-binding domain, RBD 106 271 IPR035979 GO:0003676
Trme6164g00001 286 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Trme6164g00001 286 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 274 - -
Trme6164g00001 286 MobiDBLite consensus disorder prediction 36 80 - -
Trme6164g00001 286 CDD RRM_SF 111 180 - -
Trme6164g00001 286 Gene3D - 187 267 IPR012677 -
Trme6164g00001 286 SMART rrm2_1 110 180 IPR003954 GO:0003676
Trme6164g00001 286 Gene3D - 32 186 IPR012677 -
Trme6164g00001 286 MobiDBLite consensus disorder prediction 1 94 - -
Trme6164g00001 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Trme6164g00001 286 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6164g00001 Trme-Chr6164 321 1671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6164g00001 109 250 Eukaryotic Initiation Factors Gene Family AT1G49760 27.922 7.13e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6164g00001 K13161 - gmx:100798476 377.867