Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme616448g00001 GTTTCTGCCGCTGCTGGTGGTTCTGACGAAGAGAAGGATGACGTGAGATTGACTAGTGAAGACTCAAAGAAGAGTTTTCGAAGAATCTTCAGTGAAGAAGATGAACTTGCTATTCTGAAAGCTGTTGCGGACTTCATTCCCAAAACTGGAAAGGATCCTTTGAAGGATATAGCTGCTTTTCACGATTTCGAAATCGCTTCGTGCTACGGCGAGTACCCAGCAACTTAA 228 0.443 VSAAAGGSDEEKDDVRLTSEDSKKSFRRIFSEEDELAILKAVADFIPKTGKDPLKDIAAFHDFEIASCYGEYPAT 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme616448g00001 75 MobiDBLite consensus disorder prediction 1 22 - -
Trme616448g00001 75 Pfam Protein of unknown function, DUF573 26 63 IPR007592 GO:0006355
Trme616448g00001 75 MobiDBLite consensus disorder prediction 7 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme616448g00001 Trme-Chr616448 35 262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme616448g00001 16 60 GeBP Transcription Factor Family AT4G25210 51.111 6.29e-09 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trme616448g00001 DUF573 4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme616448g00001 - - mtr:11424230 87.0409