Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme615250g00001 ATGAGTTGGTTGACACGCCACCATATCGCGGTGGGGATAGCGCGTGGCCTTGCATATCTCCACCATGCGAGTTCAAAACCAATTGTGCACGGACACCTTGTCACCTCCAACATTTTGCTTACTGATGATTTTGAGCCTCGAATCTCCGATTTTGGACCGCAAATCAACTCGAGTTCCAATGGTGGCACTAAGGATGATGTGTACTGCTTTGGAGTGGTGTT 221 0.4887 MSWLTRHHIAVGIARGLAYLHHASSKPIVHGHLVTSNILLTDDFEPRISDFGPQINSSSNGGTKDDVYCFGVV 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme615250g00001 73 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 73 - -
Trme615250g00001 73 SUPERFAMILY Protein kinase-like (PK-like) 1 73 IPR011009 -
Trme615250g00001 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme615250g00001 73 Gene3D Transferase(Phosphotransferase) domain 1 1 60 - -
Trme615250g00001 73 Pfam Protein tyrosine and serine/threonine kinase 6 52 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme615250g00001 Trme-Chr615250 1 221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme615250g00001 1 73 Receptor kinase-like Gene Family AT5G49660 39.796 4.94e-18 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trme615250g00001 PK_Tyr_Ser-Thr 1.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme615250g00001 - - gmx:100809704 123.25