Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme61480g00001 ATGGATGAAGGTACTGCATACTATATTAATCTCTCGGATTTGAAAGAAGCTACGAACAATTTTTCAAAGAAAATTGGAAAAGGAAGCTTTGGATCTGTCTATTATGGGAAAATGAAAGACGGAAAAGAGATCGCAGTTAAGACTATGACTGATCCATCCAGCCATGGGAACCATCAATTTGCAACCGAGGTAGCTCTCTTATCGAGAATACATCACAGAAACTTGGTTCCTTTGATTGGATATTGTGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCACAATGGCACTCTAAGGGATCACATTCATGAATGTTCGAGTCAGAAACGATTGGACTGGTTAACTCGTCTTCGAATTGCAGAAGATTCAGCCAAAGGTTGA 387 0.385 MDEGTAYYINLSDLKEATNNFSKKIGKGSFGSVYYGKMKDGKEIAVKTMTDPSSHGNHQFATEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHECSSQKRLDWLTRLRIAEDSAKG 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme61480g00001 128 FunFam Leucine-rich repeat receptor-like protein kinase 2 94 - -
Trme61480g00001 128 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Trme61480g00001 128 Gene3D Transferase(Phosphotransferase) domain 1 3 128 - -
Trme61480g00001 128 Pfam Protein tyrosine and serine/threonine kinase 21 128 IPR001245 GO:0004672|GO:0006468
Trme61480g00001 128 SUPERFAMILY Protein kinase-like (PK-like) 7 128 IPR011009 -
Trme61480g00001 128 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 128 - -
Trme61480g00001 128 ProSiteProfiles Protein kinase domain profile. 19 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme61480g00001 Trme-Chr61480 52 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme61480g00001 1 128 Receptor kinase-like Gene Family AT1G67720 74.219 5.97e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme61480g00001 PK_Tyr_Ser-Thr 2.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme61480g00001 - - aprc:113850330 245.743