Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme61479g00001 GCAGCTAGTGAGCTGCAGGAATATGTGGAAAGCGTGGTAAAGCTAGAGAAGGAGATGGCTAAGCTAAGACTAAAATCTGATTCCAAAAACAGTACTCCATCTGCGGTGAAAGAAAACAAGAAATCTGAGATGACAGCGGGGAGCTCACAAGACAAACTGGCAGGTGGAAGATTGAAGCGGGAGCACGAGTGTGTCATGTGCTTATCAGAAGAGAGGTCGGTTGTTTTTCTGCCATGCGCTCATCAGGTTTTGTGTCCGAAATGCAATGTGCTCCATGAGAAGCAAGGGATGAAGGACTGCCCTTCTTGTAGGACCCCCATCAAGTTTAGGATTCATGCCAAATTTCTTGGGCAGCAGTAG 360 0.4722 AASELQEYVESVVKLEKEMAKLRLKSDSKNSTPSAVKENKKSEMTAGSSQDKLAGGRLKREHECVMCLSEERSVVFLPCAHQVLCPKCNVLHEKQGMKDCPSCRTPIKFRIHAKFLGQQ 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme61479g00001 119 CDD RING-HC_MIP1-like 59 111 - -
Trme61479g00001 119 ProSiteProfiles Zinc finger RING-type profile. 64 104 IPR001841 -
Trme61479g00001 119 MobiDBLite consensus disorder prediction 23 54 - -
Trme61479g00001 119 MobiDBLite consensus disorder prediction 26 49 - -
Trme61479g00001 119 Pfam Zinc finger, C3HC4 type (RING finger) 61 108 - -
Trme61479g00001 119 SUPERFAMILY RING/U-box 63 110 - -
Trme61479g00001 119 Coils Coil 5 25 - -
Trme61479g00001 119 PANTHER OS05G0141500 PROTEIN 1 113 IPR046934 -
Trme61479g00001 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme61479g00001 Trme-Chr61479 2 361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme61479g00001 40 111 C3H Transcription Factor Family AT1G73950 38.356 9.47e-08 47.0