Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme61345g00001 ATGAATATGGCACTTCATGTGTATGACGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGAAGTGGTGCATCGAGTACGGTTTATAAATGTGTTCTTAAAAATTGCAAGCCAGTTGCCATAAAGAGGCTCTATTCTCACTATCCACAATACTTGAAAGAATTTGAGACTGAGCTTGCGACTGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCACCGTATGGCCACCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCACGGACCTTGCAAGAAGAAAAAACTTGACTGGAATCTGCGTCTAAAAATAGCACTCGGAGCAGCACAAGGGCTTGCATATTTGCACCATGATTGCAGTCCTCGCATCATCCACAGGGATGTGAAATCATCGAACATTTTACTGGACGCAGATTTTGAGCCGCATCTCACGGATTTTGGCATTGCCAAAAGTCTCTGCCCTACAAAGACCCATACCTCTACTTACATAATGGGCACAATTGGCTACATAGATCCTGAGTATGCCAGAACTTCCCGTCTCACTGAGAAATCTGATGTCTACAGCTATGGTATTGTTTTACTTGAATTGCTAACTGGAAGAAAAGCTGTTGACAATGAATCCAACCTCCATCATCTA 684 0.4254 MNMALHVYDDIMRMTENLSEKYIIGSGASSTVYKCVLKNCKPVAIKRLYSHYPQYLKEFETELATVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPCKKKKLDWNLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme61345g00001 228 Gene3D Transferase(Phosphotransferase) domain 1 94 228 - -
Trme61345g00001 228 ProSiteProfiles Protein kinase domain profile. 18 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme61345g00001 228 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 226 - -
Trme61345g00001 228 Gene3D Phosphorylase Kinase; domain 1 2 93 - -
Trme61345g00001 228 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 228 - -
Trme61345g00001 228 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 93 - -
Trme61345g00001 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Trme61345g00001 228 SUPERFAMILY Protein kinase-like (PK-like) 5 225 IPR011009 -
Trme61345g00001 228 PIRSF ILK 12 226 - -
Trme61345g00001 228 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Trme61345g00001 228 Pfam Protein kinase domain 21 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme61345g00001 228 SMART serkin_6 18 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme61345g00001 Trme-Chr61345 47 830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme61345g00001 1 228 Receptor kinase-like Gene Family AT5G62230 77.193 8.48e-130 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Trme61345g00001 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme61345g00001 K20718 - lja:Lj0g3v0173389.1 454.521