Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme612721g00001 ATGGCTCCGGTTCGAATTCCTCTGCCTCTTGATCTTCGTGAGGAGCCAATATATGTGAATGCGAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTAGAAGCA 117 0.4615 MAPVRIPLPLDLREEPIYVNAKQYHAIMRRRQYRAKLEA 39
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme612721g00001 39 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 39 IPR001289 GO:0003700|GO:0006355
Trme612721g00001 39 Gene3D - 13 39 - -
Trme612721g00001 39 ProSiteProfiles NF-YA/HAP2 family profile. 13 39 IPR001289 GO:0003700|GO:0006355
Trme612721g00001 39 ProSitePatterns NF-YA/HAP2 subunit signature. 18 38 IPR018362 GO:0003677|GO:0016602
Trme612721g00001 39 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 15 39 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme612721g00001 Trme-Chr612721 1 117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme612721g00001 5 39 CCAAT-HAP2 Transcription Factor Family AT1G17590 77.778 7.81e-14 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme612721g00001 CBFB_NFYA 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme612721g00001 K08064 - gmx:100500765 73.9442