Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme61229g00001 CAACGTCTCAATGATATTGTTGGTAGTGCCTACTATGTTGCACCTGAAGTGCTCCATAGATCGTATAGTGTTGAAGGAGACTTATGGAGTATTGGAGTTATAACTTACATATTGTTATGTGGAAGTAGACCGTTTTGGGCACGGTCTGAATCAGGAATCTTCCGGTCAGTGTTAAGAGCAAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTCGTGAAGAGACTTTTGAACAAAGACCACAGAAAAAGAATGACTGCTGCTCAAGCTTTATGTATGGTTCATTTGAATGTTTTGCTCAGACCATGCTTAACTGAATGCTCACCCGTGGTTGAGAGATGA 363 0.4077 QRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVITYILLCGSRPFWARSESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALCMVHLNVLLRPCLTECSPVVER 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme61229g00001 120 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 102 - -
Trme61229g00001 120 Pfam Protein kinase domain 3 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme61229g00001 120 SMART serkin_6 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme61229g00001 120 SUPERFAMILY Protein kinase-like (PK-like) 3 106 IPR011009 -
Trme61229g00001 120 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Trme61229g00001 120 FunFam Calcium-dependent protein kinase SK5 13 105 - -
Trme61229g00001 120 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme61229g00001 Trme-Chr61229 316 771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme61229g00001 1 99 EF-hand Containing Proteins AT2G46700 82.828 2.94e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme61229g00001 Pkinase 8.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme61229g00001 K13412 - gmx:100794478 200.675