Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme61036g00001 TTCTTGATTATCAAAGCTTTCAAGAAAAGAAAGGAAGGTTTGGATAATTCATGGAAGCTTATATCCTTTCAGAGGCTCAGTTTCGATGAATCAAGCATTGTCTCATCAATGACAGAACAAAATATTATTGGAAGTGGTGGATATGGCACGGTATATCGAGTTGATGTCGATGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAATAACAAAAAGTTAGACGACAAACTCAGGAGTTCGTTTTGCGCTGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAGACTGTTGTGTTGTATCTCTAATGACGATTCTATGCTTCTTGTCTATGAGTATCTTGAAAAACATAGTCTAGACAAGTGGCTGCGCACGAAGAGTAAGTCATCGTCATCAACTTTCTCAGGTTCGGTACAGCCACATGTTGTTCTTGATTGGCCAAAGAGGTTGAAAATAGCTATTGGAGCTGCTCAAGGTTTGAGCTACATGCATCATGATTGCTCACCACCTATTATTCATAGAGATGTTAAAACAAGCAACATACTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTTGCTAGGATTTTAGTCAAGCCAGATGAACTTAACACAATGTCATCTGTGATTGGCTCATTTGGCTACATTGCTCCAGGTGAATGA 678 0.3805 FLIIKAFKKRKEGLDNSWKLISFQRLSFDESSIVSSMTEQNIIGSGGYGTVYRVDVDGLGYVAVKKIWNNKKLDDKLRSSFCAEVKILSNIRHNNIVRLLCCISNDDSMLLVYEYLEKHSLDKWLRTKSKSSSSTFSGSVQPHVVLDWPKRLKIAIGAAQGLSYMHHDCSPPIIHRDVKTSNILLDAQFNAKVADFGLARILVKPDELNTMSSVIGSFGYIAPGE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme61036g00001 225 SUPERFAMILY Protein kinase-like (PK-like) 31 223 IPR011009 -
Trme61036g00001 225 Pfam Protein kinase domain 39 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme61036g00001 225 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 223 - -
Trme61036g00001 225 FunFam Os07g0541700 protein 129 217 - -
Trme61036g00001 225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Trme61036g00001 225 Gene3D Transferase(Phosphotransferase) domain 1 24 224 - -
Trme61036g00001 225 FunFam Receptor-like protein kinase HSL1 17 115 - -
Trme61036g00001 225 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Trme61036g00001 225 ProSiteProfiles Protein kinase domain profile. 37 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme61036g00001 225 SMART serkin_6 37 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme61036g00001 Trme-Chr61036 2 679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme61036g00001 1 223 Receptor kinase-like Gene Family AT5G25930 59.471 1.42e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme61036g00001 Pkinase 8.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme61036g00001 - - gmx:100820277 353.599