Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60927g00001 ATATCTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAAGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAACAAGCTGATCCATCGACTACTCGACTGCATGGAGGGACTGGTCTTGGTCTTTGCATTGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAAGGAACATTG 228 0.4123 ISMRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTL 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60927g00001 76 Gene3D - 1 76 IPR036890 -
Trme60927g00001 76 PANTHER TWO-COMPONENT HISTIDINE KINASE 4 75 - -
Trme60927g00001 76 PRINTS Bacterial sensor protein C-terminal signature 45 63 IPR004358 GO:0016310|GO:0016772
Trme60927g00001 76 PRINTS Bacterial sensor protein C-terminal signature 28 38 IPR004358 GO:0016310|GO:0016772
Trme60927g00001 76 PRINTS Bacterial sensor protein C-terminal signature 10 24 IPR004358 GO:0016310|GO:0016772
Trme60927g00001 76 PRINTS Bacterial sensor protein C-terminal signature 69 76 IPR004358 GO:0016310|GO:0016772
Trme60927g00001 76 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 7 75 IPR003594 -
Trme60927g00001 76 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3 75 IPR036890 -
Trme60927g00001 76 ProSiteProfiles Histidine kinase domain profile. 1 76 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60927g00001 Trme-Chr60927 1 877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60927g00001 6 76 Histidine Kinase Gene Family AT2G17820 88.732 6.38e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60927g00001 - - lja:Lj2g3v1681040.2 150.984