Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6089g00001 CGTAAGTCAGAGCCAGTTGGCGAAACTGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAGCTTTATTGTGAGTGTTTTGCTGCTGGTGTTTACTGCATAGAACCCTGCTCCTGTCAGGAATGCTTCAACAAGCCTATTCATGAAGATACTGTTCTTCAAACGCGCAAACAGATTGAATCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTGCAGACTCCGTGCCTGAAGTTGGGATTGACCCAAACAAAACTCCAGCTTCAGCACGCCATAAAAGAGGGTGCAACTGCAAGAAGTCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTAACTGCAGATGTGAAGGGTGCAAGAACGCATTCGGTAGAAAGGATGGGTCTGCTTCAATAGGAATAGAAGGTGAGATAGAAGAAGAAGAAACTGAAACAAGTGACAAGGGTGTGGAGGAAAAGGCTATTCAGAAAACTGAAATTCAAAATATTGAAGATCATCCAGAGTCTTCTTTGGTCTCAACACCGTTGCAGCTTTCCAGGCCATTGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACTGGTTCTGGATATTTTGCCAGCCAAAAGCTTGCGATGCCAAATTCTCTTTGGTCTCAATCTAAGCCTTTTCAGACTATTCCAGACGATGAAATGCCAGAGATTCTCCGTGGTGATAGCTCTCCTATCGCATGCATCAAAACATCATCTCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAATGGGATCGTCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACCTCTCACCCTTAG 912 0.4452 RKSEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSASIGIEGEIEEEETETSDKGVEEKAIQKTEIQNIEDHPESSLVSTPLQLSRPLLPMPFSSKGKPPRSFVTTITGSGYFASQKLAMPNSLWSQSKPFQTIPDDEMPEILRGDSSPIACIKTSSPNGKRISSPNCEMGSSPARRGGRKLILQSIPSFPSLTSHP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6089g00001 303 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 300 IPR044522 GO:0003700
Trme6089g00001 303 SMART CXC_2 10 51 IPR033467 -
Trme6089g00001 303 SMART CXC_2 96 137 IPR033467 -
Trme6089g00001 303 MobiDBLite consensus disorder prediction 261 277 - -
Trme6089g00001 303 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 13 48 IPR005172 -
Trme6089g00001 303 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 98 134 IPR005172 -
Trme6089g00001 303 MobiDBLite consensus disorder prediction 261 303 - -
Trme6089g00001 303 ProSiteProfiles CRC domain profile. 11 136 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6089g00001 Trme-Chr6089 144 1697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6089g00001 7 300 CPP Transcription Factor Family AT4G14770 65.260 5.33e-113 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trme6089g00001 TCR 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6089g00001 - - mtr:11423771 570.466