Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60876g00001 ATGGGCAGTGATGAGGCTCAACAGTTATTGCTTTCAGAGTCAATGGAACATTCTCATCTCAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACCGCGGCGTGGCGGCACTTCAGAGACAGATATCAATATGCCGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTACTACCTCAATGTATAGATGAAAAACAAGAAGCAGAATTCAATTTCAGGCCAGTGTTCTTGTGTTTAGCAGCTTACCTAGGTACAGGTACCTTATGTTTCTTTCTCGCAAGTTACCAAATTCAGGGCATAAAAACAAATGGATTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCTAATAGCACTATAGCAAAATTACTTGCTTGCATTTATGTCTTCACTGGTATGGCTCTAGGTGGCTTAATTCTTAGCAAAGCAGCCGATTACATTGTTGAAAAAGAAGAAATATTTGTTGTTAAAGCCATGCACAAAGCTGAAAAATTTGGTCCAGAAGAGATTTCTAAAGAACTTGGAACTAATAAAAGCAAATACAAGTTTGTGCTAGCAGCATCTATTTTTCTTGTGCTCATGATTGTAGGGACTGTTTTTCTCTATTTTATTGAAAAACTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGAGATAAGAGCTTCTCAACTGCTGCTGGTAGGACTTTTGCT 744 0.3871 MGSDEAQQLLLSESMEHSHLNEKSDLLQRRRPRRGGTSETDINMPQEQNGVLQTPLLPQCIDEKQEAEFNFRPVFLCLAAYLGTGTLCFFLASYQIQGIKTNGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKEEIFVVKAMHKAEKFGPEEISKELGTNKSKYKFVLAASIFLVLMIVGTVFLYFIEKLDFVDALYCVCSTVTTLGYGDKSFSTAAGRTFA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60876g00001 248 PRINTS Two pore domain K+ channel signature 113 141 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trme60876g00001 248 PRINTS Two pore domain K+ channel signature 230 239 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trme60876g00001 248 MobiDBLite consensus disorder prediction 17 37 - -
Trme60876g00001 248 Pfam Ion channel 77 157 IPR013099 -
Trme60876g00001 248 Pfam Ion channel 198 248 IPR013099 -
Trme60876g00001 248 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 102 247 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trme60876g00001 248 MobiDBLite consensus disorder prediction 17 48 - -
Trme60876g00001 248 SUPERFAMILY Voltage-gated potassium channels 184 248 - -
Trme60876g00001 248 SUPERFAMILY Voltage-gated potassium channels 70 158 - -
Trme60876g00001 248 Gene3D - 54 179 - -
Trme60876g00001 248 Gene3D - 180 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60876g00001 Trme-Chr60876 135 878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60876g00001 53 248 Ion Channels AT5G55630 56.633 1.09e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60876g00001 K05389 - gmx:100799492 356.295