Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60867g00001 CAGCAACCATGGAGTTATCAAGAAATCACAAATCAGAATGGTTTTTCACCTGAAAACAATATGATCCAAACTGAAAACAACAACTCTTCAATGCAGAGTTTTTCACCTGAAACCAATATGATTCAAGCCGAAAACAACAACATTTCAATGCATAGTTTTTCCCCTGAGATTGCTAATGTTCAAACCATCACCAACAACAATGGATTCCAATTAGATCATAACACCAATTACACAATCTTAAGCAGAAGATCAGATGATGGATACAATTGGCGAAAATAYGGACAAAAACAAGTTCGAGGAAGYGAAAATCCAAGAAGTTATTACAAATGCACTTACCCTAATTGTCCTACAAAGAAGAAAGTTGARAGATCAATTGARGGACAAATTACTGAGATAGTTTATAAGGGTAATCATAATCATCCTAAACCTCAAGCTGGTGTTAGGAGAAACTCATCATCATCTTCTAATTCTCTTGTGATTGTTCCTGTTAATCCAAATGGTAATGAAATCCATGATCATTCATATGGTTCTCATGGTAATGGACAAATGGATTCTGTCGCTACTCCTGAGAATTCATCGATATCAATAGGAGGTGATGATGATTTTGAGCAGAGTTCTCTTCCGAGGGCTAGATCTGTTGGTGCTGATGAATTTGTTGAAGAGGAACCTGAACCTAAAAGATGGTAA 687 0.3595 QQPWSYQEITNQNGFSPENNMIQTENNNSSMQSFSPETNMIQAENNNISMHSFSPEIANVQTITNNNGFQLDHNTNYTILSRRSDDGYNWRKYGQKQVRGSENPRSYYKCTYPNCPTKKKVERSIEGQITEIVYKGNHNHPKPQAGVRRNSSSSSNSLVIVPVNPNGNEIHDHSYGSHGNGQMDSVATPENSSISIGGDDDFEQSSLPRARSVGADEFVEEEPEPKRW 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60867g00001 228 ProSiteProfiles WRKY domain profile. 85 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme60867g00001 228 MobiDBLite consensus disorder prediction 144 163 - -
Trme60867g00001 228 Pfam WRKY DNA -binding domain 85 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme60867g00001 228 MobiDBLite consensus disorder prediction 170 200 - -
Trme60867g00001 228 MobiDBLite consensus disorder prediction 214 228 - -
Trme60867g00001 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 227 IPR044810 GO:0003700
Trme60867g00001 228 MobiDBLite consensus disorder prediction 135 228 - -
Trme60867g00001 228 FunFam WRKY transcription factor 73 144 - -
Trme60867g00001 228 SUPERFAMILY WRKY DNA-binding domain 82 143 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme60867g00001 228 MobiDBLite consensus disorder prediction 1 34 - -
Trme60867g00001 228 Gene3D WRKY domain 72 144 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme60867g00001 228 SMART WRKY_cls 84 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60867g00001 Trme-Chr60867 176 862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60867g00001 82 228 WRKY Transcription Factor Family AT2G38470 54.305 2.76e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme60867g00001 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60867g00001 K13424 - gmx:100127385 258.84