Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6076g00001 ATGATTCAACTTTTAGACAGACAAAAGTCAAATGATGTTCTACTACTAGGGATGTGGGGGATGGGTGGAGTTGGTAAAACCACCATTGCAAAAGTCATTTACAATAAAATTGGCCGCAACTTTGAAGGTAGAAGCTTTCTTGAAAATATTAGGGAGGTTTGGGAGCAAGCTTGTGGACAAGTRTATTTACAAGAACGCCTTATGCATGATATTTTTAAAGAAACCACAGCCAACATAAAAAGCATCGAATCAKGGAAATCTATATTAAAGAAAAGGCTCTGCAATAAAAGAGTATTTCTTGTGCTTGACGATGTGAATAAATTGGAGCAACTAAATGCTTTGTGTGGAAGTTGTAAATGGTTAGCTCCAGGGAGTAGAATAATCATCACAACTAGAGATAAGCATATACTTAGAGGGAATAAAGTTGACAAAATATACACAATGAAAGAAATGGATGAAAGTGAATCTCTTGATCTTTTTAGTTGGCATGCATTCAAGCAAAAGATTCCTAGAGAAGATTTTTTTGAAATTTCCAGAAATGTAGTTAAGTATTCTGGGGGATTGCCGCTAGCTCTTGAAGTTCTTGGGTCCTATTTGTGTGATAGGGAGGAATCAGAATGGATTTGTGTATTGGAGAAACTCAAAAGAATTCCCAATGGTCAAGTAAATAAGAAGTTAAAAATAAGCTACGATGGTTTAAATGATGATATGGAGAGAGAAATATTCCTTGACATAGCCTGTTTCTTTATTGGGATGGATCGAAGTGATGTTATTCATATATTAAATGGTTGTGGACTTTTTGCAGAAATTGGAATAAGTGTCCTTGTTGAGCGAAGCCTTGTAACTGTTGATGATAATAACAAGTTTGGCATGCATGATTTGCTGCGAGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAAATGTGCTTGAGGAACGTAGTAGGTTGTGGTTTCATGAGGATGTGCTTGATGTACTGTCAGAACATACCGGTACAAAAGCTGTCGAGGGACTGACTTTGAAGCTGCCAGGTCTTATTGCACAACATTTTAGTACCAAAGCATTTGAGAACATGAAGAGACTTAGATTGCTTCAACTTTCCGGTGCTCGAGTTGATGGAGATTTTAAATATCTTTCAAGAAATTTGAGATGGCTGTATTGGAATGGATTTCCTTTAACATACATACCTTCAAACTTCTATCAAAGAAATTTAATTTCCATTGAGTTGGAAAACAGCAATGTCAAACGTGTGTGGAAAGAGATGCAGGATCCCATCGACTAA 1284 0.3653 MIQLLDRQKSNDVLLLGMWGMGGVGKTTIAKVIYNKIGRNFEGRSFLENIREVWEQACGQVYLQERLMHDIFKETTANIKSIESXKSILKKRLCNKRVFLVLDDVNKLEQLNALCGSCKWLAPGSRIIITTRDKHILRGNKVDKIYTMKEMDESESLDLFSWHAFKQKIPREDFFEISRNVVKYSGGLPLALEVLGSYLCDREESEWICVLEKLKRIPNGQVNKKLKISYDGLNDDMEREIFLDIACFFIGMDRSDVIHILNGCGLFAEIGISVLVERSLVTVDDNNKFGMHDLLRDMGREIIREKSPNVLEERSRLWFHEDVLDVLSEHTGTKAVEGLTLKLPGLIAQHFSTKAFENMKRLRLLQLSGARVDGDFKYLSRNLRWLYWNGFPLTYIPSNFYQRNLISIELENSNVKRVWKEMQDPID 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6076g00001 427 Gene3D - 150 234 IPR042197 -
Trme6076g00001 427 Pfam NB-ARC domain 2 232 IPR002182 GO:0043531
Trme6076g00001 427 SUPERFAMILY "Winged helix" DNA-binding domain 222 327 IPR036390 -
Trme6076g00001 427 Gene3D - 1 145 IPR027417 -
Trme6076g00001 427 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 418 IPR044974 GO:0006952
Trme6076g00001 427 Gene3D Ribonuclease Inhibitor 305 423 IPR032675 -
Trme6076g00001 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 245 IPR027417 -
Trme6076g00001 427 SUPERFAMILY L domain-like 340 420 - -
Trme6076g00001 427 PRINTS Disease resistance protein signature 15 30 - -
Trme6076g00001 427 PRINTS Disease resistance protein signature 357 373 - -
Trme6076g00001 427 PRINTS Disease resistance protein signature 92 106 - -
Trme6076g00001 427 PRINTS Disease resistance protein signature 185 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6076g00001 Trme-Chr6076 11 1802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6076g00001 12 424 WRKY Transcription Factor Family AT5G45050 34.545 8.79e-71 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6076g00001 - - cam:101494533 644.039