Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme60767g00001 | ATGTGCAGCTATGGCGGACACATTATGCCGCGCCCGCATGATAAATCCTTGTGTTATGTCGGTGGTGACACGCGAATTGTGGTGGTTGACCGGAGTGCTTCCCTGAGAGATCTTTGTTCTCGTCTTTCGAGAACAATTCTTAATGGAAGACCCTTTACTCTAAAATACCAGCTTCCAAATGAAGACCTTGATAACCTCATCACAGTAACATCAGATGAAGATCTTGATAATATGATCGAAGAATACGATCGAATAGCATCTTCATCAATGAAACCTTCATCTTCAAGACTCAGAGTGTTTCTTTTCTTCACAAAACCAGATTCTACTCTTTCAATGGGTTCTCTACTTGATGATGCAAAATCTGAAACATGGTTTGTTGATGCACTCAACAACTCAGGAATCCTCTCAAGGGGTGTTTCAGATTCAGAACGGGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGTAACAACTTGGAATCTCAAGGTGTAGTAGCAGCAGAGTCATTGAATATCCTTGAAGACACCAACAACAATAACAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTGCACCTGGTTCACCTATGCTTGAGAATAGTCCATCTTCATCTTCTTTGTCTCCTTCTATAGCTAATTTACCTCCGATTCGTGTTCGTGTTGACGAAACTGGTGGTAGCAGGCTTCAACAAGAGAATAAAGTTGGAATGAAGCAAGATGGTGGTTATGTTGTTTCTTATGCTAATATGGCTATGGCTGCAATTCCTTCAGCTGGAGTTGTGACTACTACTGCTACTGTTAGTGATGTTAATTTGAATAGGGTTGTTTCTGATGATGA | 851 | 0.3984 | MCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSASLRDLCSRLSRTILNGRPFTLKYQLPNEDLDNLITVTSDEDLDNMIEEYDRIASSSMKPSSSRLRVFLFFTKPDSTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSERDSFVNLDNVPASDSSNNLESQGVVAAESLNILEDTNNNNNNVKNVFDVVNVAPGSPMLENSPSSSSLSPSIANLPPIRVRVDETGGSRLQQENKVGMKQDGGYVVSYANMAMAAIPSAGVVTTTATVSDVNLNRVVSDD | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme60767g00001 | 283 | CDD | PB1_UP2 | 1 | 102 | - | - | |
| Trme60767g00001 | 283 | ProSiteProfiles | PB1 domain profile. | 1 | 102 | IPR000270 | GO:0005515 | |
| Trme60767g00001 | 283 | Pfam | PB1 domain | 13 | 102 | IPR000270 | GO:0005515 | |
| Trme60767g00001 | 283 | PANTHER | OS05G0427100 PROTEIN-RELATED | 1 | 237 | - | - | |
| Trme60767g00001 | 283 | SMART | PB1_new | 12 | 102 | IPR000270 | GO:0005515 | |
| Trme60767g00001 | 283 | SUPERFAMILY | CAD & PB1 domains | 13 | 113 | - | - | |
| Trme60767g00001 | 283 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 17 | 104 | - | - | |
| Trme60767g00001 | 283 | Gene3D | - | 17 | 103 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme60767g00001 | Trme-Chr60767 | 1 | 851 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme60767g00001 | 1 | 131 | MAP Kinase Kinase Kinase | AT5G57610 | 46.212 | 1.77e-27 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme60767g00001 | - | - | cam:101514979 | 394.045 |