Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60755g00001 TCCGCTTTCAGCATCTCCCCGGAGCCTCACCGTACACTCATCGACGTCAACCGCGCCTCCCGTAACACTCTCTCAATTCTCCGAAACAGCGTAGGAACAAACCACAACCAAAACTTCTCACCAGAACCAGAAGAAGAAGACGAAGAAATCGAAGACGAAACCGATCGAGATGGTTCGGGATCTGATTCACGAAAACANCGGAAACTCGATTCGGTTACGGAGGAAGCAGATTCAGCGGTTAGAACAACTGAAACGACGTTAAAACGGCCGCGTTTGGTTTGGACTCCACAGTTACATAAAAGATTCGTTGATGTAGTTGCTCATCTTGGAATAAAAAACGCTGTTCCGAAAACGATTATGCAGTTGATGAATGTTGAAGGATTAACACGTGAGAATGTTGCTTCTCATTTACAGAAATATCGTCTTTATTTGAAGAGGATGCAAGGTCTTTCAAACGATGCACCTTCTTCTTCTGATCATCTTTTTGCATCTACACCTGTTCCTCAGAGTTTGCAATTGCAGCAACATGAATCTGTTTCTGCTAATAATCATTCTCATTCACATTCCAATGGACATGGAAATGGGAATAATTCGCATTCGCATCATTCTGTTACTATTCCTATGCCATATCCACCACCTCCGACGATGATGTCAATGCCGCCGTTGCTTGGTATGGGACATCATCATCCTCATCATCATCCACATGGTCATATGGGGATGAGTTTGCCTCCTCCNTCTGGTTCTAACTCGTATCGGTCGCATCCGTTTAATATGATGCATCATAGGGATTGGCCTCCGAATCCTCACTCTCATCATCCTCATATGTCTGCTAATGATAGTAATAAATAA 849 0.4358 SAFSISPEPHRTLIDVNRASRNTLSILRNSVGTNHNQNFSPEPEEEDEEIEDETDRDGSGSDSRKXRKLDSVTEEADSAVRTTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLQLQQHESVSANNHSHSHSNGHGNGNNSHSHHSVTIPMPYPPPPTMMSMPPLLGMGHHHPHHHPHGHMGMSLPPPSGSNSYRSHPFNMMHHRDWPPNPHSHHPHMSANDSNK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60755g00001 282 Pfam Myb-like DNA-binding domain 93 141 IPR001005 -
Trme60755g00001 282 MobiDBLite consensus disorder prediction 150 282 - -
Trme60755g00001 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 145 IPR017930 -
Trme60755g00001 282 MobiDBLite consensus disorder prediction 256 282 - -
Trme60755g00001 282 FunFam Two-component response regulator 85 148 - -
Trme60755g00001 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Trme60755g00001 282 Gene3D - 85 148 - -
Trme60755g00001 282 MobiDBLite consensus disorder prediction 150 204 - -
Trme60755g00001 282 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 249 IPR044841 GO:0003700|GO:0006355
Trme60755g00001 282 MobiDBLite consensus disorder prediction 27 70 - -
Trme60755g00001 282 MobiDBLite consensus disorder prediction 42 56 - -
Trme60755g00001 282 SUPERFAMILY Homeodomain-like 86 146 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60755g00001 Trme-Chr60755 30 878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60755g00001 2 172 G2-like Transcription Factor Family AT3G46640 60.526 3.19e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme60755g00001 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60755g00001 - - vvo:131639158 367.466