Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme606652g00001 GAAGGATTGGACTACCTACACCATGGATGCAAGCCACCTATAATACACAGAGATGTAAAATCAGCCAACATTCTTCTAAGTGAAGATTTAGAAGCTAAGATAGCAGATTTTGGACTCTCTAAGGTTTTTAAGAATAGTGATAATCAAAATGCAGATTCTACAATGATTCATGTTGATGTTGGTAATGAAAAATCTGCAATCATGGGAACAATGGGATACCTTGATCCAGAGTGA 234 0.3632 EGLDYLHHGCKPPIIHRDVKSANILLSEDLEAKIADFGLSKVFKNSDNQNADSTMIHVDVGNEKSAIMGTMGYLDPE 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme606652g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 1 77 IPR011009 -
Trme606652g00001 77 Pfam Protein kinase domain 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme606652g00001 77 PANTHER OS07G0107800 PROTEIN-RELATED 2 77 - -
Trme606652g00001 77 ProSitePatterns Serine/Threonine protein kinases active-site signature. 14 26 IPR008271 GO:0004672|GO:0006468
Trme606652g00001 77 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
Trme606652g00001 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme606652g00001 Trme-Chr606652 1 234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme606652g00001 1 77 Receptor kinase-like Gene Family AT4G29180 61.039 3.79e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme606652g00001 Pkinase 4.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme606652g00001 - - gmx:100779617 127.872