Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60656g00001 ATGGAGACTACCAAGAGTAGCTCTGCTGTGGAGAAGAGCTATGAGTTGCCTGATGGACAAGTCATTACAATAGGTTCTGAGAGATTCCGTTGCCCTGAAGTACTCTTCCAGCCTTCTCTAATTGGTATGGAAGCTACTGGAATTCATGAAACTACATACAACTCTATCATGAAATGTGATGTGGATATCAGGAAGGATCTATATGGAAATATTGTGCTTAGTGGAGGTTCTACTATGTTTCCTGGAATCGCTGATCGTATGAGCAAGGAAATTAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCACCTCCCGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTCAGCACCTTTCAGCAGATGTGGATCTCCAAGGGTGAATATGATGAATCTGGTCCAGCTATCGTTCACCGAAA 440 0.4409 METTKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60656g00001 146 Gene3D - 113 143 - -
Trme60656g00001 146 Gene3D - 46 112 - -
Trme60656g00001 146 FunFam Putative actin-related protein 5 113 141 - -
Trme60656g00001 146 FunFam Major actin 31 112 - -
Trme60656g00001 146 SUPERFAMILY Actin-like ATPase domain 2 146 IPR043129 -
Trme60656g00001 146 PANTHER ACTIN 4 141 IPR004000 -
Trme60656g00001 146 SMART actin_3 1 146 IPR004000 -
Trme60656g00001 146 ProSitePatterns Actins signature 2. 130 138 IPR004001 -
Trme60656g00001 146 Gene3D Actin; Chain A, domain 4 1 45 - -
Trme60656g00001 146 Pfam Actin 3 146 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60656g00001 Trme-Chr60656 225 784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60656g00001 1 146 Cytoskeleton Gene Families AT5G09810 93.836 5.33e-99 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60656g00001 K10355 - gmx:100778206 292.737