Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60595g00001 GGAGGCTCGATTAGGCCAGGTTCGATGGCAGATAGGGCTAGGATGGCCAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCACAGCCGCGCCACTTTTGCAAGACCTGTAGAAGGTACTGGACAAGGGGCGGCGCTCTAAGAAGCGTCCCAGTTGGAGGTGGCTGCCGAAGGAACAAGAGGACTAAATCAAGCAACAACAACACCTCAAAGTCTCCAGTTAGCTCGGATCGCCAAACTAGTTCTGCAAACAACTCTCCCGCGGTACTCAGTTCCCCGACTCCACCACCGATGAGATTCATGGCTCCTTTGCATCAACTCGGGGATCACCTCGGTGAAATAGGGTTAAACTATGGTTTTTCTGGTCCAGTGGGAGGAGTAGGAGACTTGAATTTCCATATCGGAAGCTCTTTAGGTGGAGCCATTGGTAACAACGGTGTTAGTGGTGGTGGTGGTGGTGGTTCTGCTTCGATTATACCCGTTGGTGGTTTCGAGCAATGGAGGATGCCACAACAAACTCAACAATTTCCATTCTTRACARGCTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTGGTGGTAATAATCAAGCACATATATATGGTGGTGTCCCTAAGGTATTATCAAGTAATTCTAGTGTGAAAATGGAAGAAAATCAATCTAGACAATTCTTGGGAATGATCAATAATAATAACAACAATAACAATAACCCTAATAGTGAACAATATTGGAGTGCTTCTAGTGGTAATGGTGGTGCTACTTCAGCTTGGACAGATCTTGCAGCTTTTAACTCTTCTTCAACAAC 878 0.451 GGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSNNNTSKSPVSSDRQTSSANNSPAVLSSPTPPPMRFMAPLHQLGDHLGEIGLNYGFSGPVGGVGDLNFHIGSSLGGAIGNNGVSGGGGGGSASIIPVGGFEQWRMPQQTQQFPFLTXLEASSSHGLLYPFEGGGGGNNQAHIYGGVPKVLSSNSSVKMEENQSRQFLGMINNNNNNNNNPNSEQYWSASSGNGGATSAWTDLAAFNSSSTT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60595g00001 293 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Trme60595g00001 293 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Trme60595g00001 293 MobiDBLite consensus disorder prediction 243 272 - -
Trme60595g00001 293 MobiDBLite consensus disorder prediction 69 121 - -
Trme60595g00001 293 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
Trme60595g00001 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 227 IPR045174 GO:0003700|GO:0006355
Trme60595g00001 293 MobiDBLite consensus disorder prediction 1 27 - -
Trme60595g00001 293 MobiDBLite consensus disorder prediction 77 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60595g00001 Trme-Chr60595 3 880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60595g00001 5 290 C2C2-Dof Transcription Factor Family AT3G55370 41.639 2.97e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme60595g00001 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60595g00001 - - vvo:131637446 423.705