Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6049g00001 ATGCACACCCGTAGCACACAGGTAGCAGAGAGACAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCCGAAGACCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATTTATAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCACAGAAGAGATCAAAGAAGGGGACATGCCGGAGAAGACCATGGGAGAGATATTGTCCGCAATTTTGTTAAAATATTGA 396 0.4116 MHTRSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESTEEIKEGDMPEKTMGEILSAILLKY 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6049g00001 131 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Trme6049g00001 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 125 IPR027417 -
Trme6049g00001 131 PANTHER SNF2/RAD54 HELICASE FAMILY 5 107 - -
Trme6049g00001 131 Pfam Helicase conserved C-terminal domain 5 69 IPR001650 -
Trme6049g00001 131 CDD SF2_C_SNF 5 80 - -
Trme6049g00001 131 SMART helicmild6 1 69 IPR001650 -
Trme6049g00001 131 Gene3D - 2 129 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6049g00001 Trme-Chr6049 182 929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6049g00001 5 120 RAD5 or RAD16-like Gene Family AT1G05120 39.316 3.02e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6049g00001 K14439 - gmx:100798038 240.35