Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60436g00001 GGCATGAAGCAGATCTGTATAACTACAAATTCAGACACAGAATCCAATGATGTCAAACAGGCCATCAAGGACAACATATTAAATCAAATCACCAATGCTACACAAATGATAAAGCTGGAGAAGGACCCTCATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTGACATACACTTTAGAAGATGACCTGAAGCACAAATTTTTGGGTCTGGCAGTTGATTGTGCATCTGTCATCTGCTGTCGYGTGTCTCCCAAGCAAAAGGCACTGGTCACAAGGTTGGTAAAAGAAGGAACTGGGAAGACCACTCTCGCAATAGGTGATGGTGCAAATGATGTTGGTATGATACAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGTCAGTGGCATACAT 411 0.4209 GMKQICITTNSDTESNDVKQAIKDNILNQITNATQMIKLEKDPHAAFALIIDGKTLTYTLEDDLKHKFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQVSGIH 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60436g00001 137 Gene3D - 2 136 IPR023214 -
Trme60436g00001 137 Pfam haloacid dehalogenase-like hydrolase 19 124 - -
Trme60436g00001 137 SUPERFAMILY HAD-like 24 132 IPR036412 -
Trme60436g00001 137 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 134 - -
Trme60436g00001 137 NCBIfam HAD-IC family P-type ATPase 78 130 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60436g00001 Trme-Chr60436 74 881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60436g00001 1 132 Primary Pumps ATPases AT1G72700 83.459 6.11e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60436g00001 K01530 - gmx:100778710 238.039