Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60433g00001 ATGCTGAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGCTATTGTGCTGATGGCGATCAAAGGCTTCTAGTTTATGAATATATGCCACTAGGATCCTTGGAAGACCACTTACATGATCTTTCTCATGGCAAGAAACGACTTGACTGGAGCACGAGAATGAAAATAGCTGCCGGGGCTGCAAAGGGGTTAGAGTATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGTTCCAACATTTTGCTTGGTGATCGGTATCATCCCAAGTTATCTGATTTTGGTTTGGCGAAAGTTGGTCCTGTGGGGGAAAACACTCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCCATGACAGGTCAACTAACTCTGAAGTCAGATGTTTATAGCTTTGGCGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGATAATTCAAAATGTGCAGCAGAGCGGAATCTTGTTGCATGG 513 0.4288 MLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLSHGKKRLDWSTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGDRYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAERNLVAW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60433g00001 171 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Trme60433g00001 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme60433g00001 171 Pfam Protein tyrosine and serine/threonine kinase 2 157 IPR001245 GO:0004672|GO:0006468
Trme60433g00001 171 PANTHER OS07G0668900 PROTEIN 1 171 - -
Trme60433g00001 171 SMART serkin_6 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme60433g00001 171 FunFam Serine/threonine-protein kinase PBS1 30 171 - -
Trme60433g00001 171 Gene3D Transferase(Phosphotransferase) domain 1 31 171 - -
Trme60433g00001 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Trme60433g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 1 162 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60433g00001 Trme-Chr60433 201 815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60433g00001 1 171 Glycoside Hydrolase AT3G07070 74.854 1.68e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trme60433g00001 PK_Tyr_Ser-Thr 5.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60433g00001 - - gmx:100818024 333.569