Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme60341g00001 ATTAAAGCAGGAAAACCAGTGCTGAACTGGGCTAGGAGACACAAAATTGCATTAGGTATAGCAAGAGGACTAGCATATCTTCATACAGGACTCRAYGATCCTATAACTCACGCAAATGTAAGATCCAAGAACGTGCTTGTGGACGACTTCTTCGTTGCTAGGATCACCGATTTTGCTCTTGATAAGCTAATGATCCCTTCAATAGCCGACGAAATGGTTGCGCTTGCTAAGGCCGACGGCTACAAAGCACCGGAGCTTCAAAGAATGAAGAAATGTAACTCACGGACCGACGTTTACGCGTTCGGTATATTACTTCTTGAAATCTTGATCGGKAAGAAGCCTGGTAAGAACGGAAGAAGCGGTGAGTACGTGGATTTACCTTCRATGGTGAAAGTAGCGGTTTTGGAGGAGACAACGATGGAAGTGTTCGATGTGGAACTGTTGAAAGGGATAAGAAGTCCAATGGAAGACGGGTTGGTTCAAGCGCTGAAGCTAGCGATGGGATGTTGTGCGCCTGTAGCATCGGTAAGGCCGAGCATGGAAGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAATAGGTCTGCTTTATACAGTCCAACTGAGACAAGAAGTGGGAGTATTACACCATTTTGA 639 0.4554 IKAGKPVLNWARRHKIALGIARGLAYLHTGLBDPITHANVRSKNVLVDDFFVARITDFALDKLMIPSIADEMVALAKADGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme60341g00001 212 SUPERFAMILY Protein kinase-like (PK-like) 5 188 IPR011009 -
Trme60341g00001 212 SMART tyrkin_6 1 187 IPR020635 GO:0004713|GO:0006468
Trme60341g00001 212 Pfam Protein tyrosine and serine/threonine kinase 6 187 IPR001245 GO:0004672|GO:0006468
Trme60341g00001 212 Gene3D Transferase(Phosphotransferase) domain 1 1 205 - -
Trme60341g00001 212 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 6 190 - -
Trme60341g00001 212 MobiDBLite consensus disorder prediction 193 212 - -
Trme60341g00001 212 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme60341g00001 Trme-Chr60341 47 685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme60341g00001 2 212 Receptor kinase-like Gene Family AT3G24660 79.245 5.06e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme60341g00001 PK_Tyr_Ser-Thr 5.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme60341g00001 - - gmx:100814814 399.438